| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,341,312 – 25,341,403 |
| Length | 91 |
| Max. P | 0.858971 |
| Location | 25,341,312 – 25,341,403 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 77.97 |
| Mean single sequence MFE | -24.20 |
| Consensus MFE | -11.15 |
| Energy contribution | -12.63 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.858971 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25341312 91 - 27905053 CUCUUGUAAAUCCCAUUUGGAUUCCCCUGACGCCACCGAUUGGCGUCAAAAUCAAUCCGAAAUCCCAGGCACUCAACGCUGGGCGGACAGC ..........(((..((((((((....((((((((.....)))))))).....))))))))..(((((.(.......)))))).))).... ( -29.10) >DroVir_CAF1 28061 74 - 1 AUC-----------AUGUGCAUCA----CAUGUCUUCAACUGGCGUCAAAAUCAAGCGA-AAAUUAAUACACUCA-CGCUAUGCUGUCAGC ..(-----------(((((...))----)))).......((((((.((......((((.-...............-)))).)).)))))). ( -11.99) >DroSec_CAF1 26264 91 - 1 CUCUUCAAAAUCCCAUUUGGAUUCCCCUGACGCCACCGAUUGGCGUCAAAAUCAAUCCGAAAUCCCAUGCACUCAACGCUGGGCGGACAGC ..........(((..((((((((....((((((((.....)))))))).....))))))))..((((.((.......)))))).))).... ( -29.10) >DroSim_CAF1 26647 91 - 1 CUCUUCAAAAUCCCAUUUGGAUUCCCCUGACGCCACCGAUUGGCGUCAAAAUCAAUCCGAAAUCCCAGGCACUCAACGCUGGGCGGACAGC ..........(((..((((((((....((((((((.....)))))))).....))))))))..(((((.(.......)))))).))).... ( -29.10) >DroEre_CAF1 26443 91 - 1 CUCUUGAAAAUCCCAUUUGGAGCCCCCUAACGCCACCGAUUGGCGUCAAAGUCAAUCCGAAAUCCCAGGCACUUAACGCUGGGCGGACAGC ..........(((..((((((........((((((.....)))))).........))))))..(((((.(.......)))))).))).... ( -23.03) >DroYak_CAF1 29019 80 - 1 CUCUUGAAACUCCCAUUUGGAUCCC-----------CGAUUGGCGUCAAAAUCAAUCCGAAAUCCCAGCCACUUAACGCUGGGCGGACAGC ...((((.....(((.((((....)-----------))).)))..))))......((((....((((((........)))))))))).... ( -22.90) >consensus CUCUUGAAAAUCCCAUUUGGAUCCCCCUGACGCCACCGAUUGGCGUCAAAAUCAAUCCGAAAUCCCAGGCACUCAACGCUGGGCGGACAGC ...............(((((((.......(((((.......)))))........)))))))................((((......)))) (-11.15 = -12.63 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:51 2006