| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,303,510 – 25,303,602 |
| Length | 92 |
| Max. P | 0.862608 |
| Location | 25,303,510 – 25,303,602 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.68 |
| Mean single sequence MFE | -23.47 |
| Consensus MFE | -15.06 |
| Energy contribution | -14.82 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.862608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25303510 92 + 27905053 UGGCAAAAUCAUUUACAUUCGCAUUUACUUUU----------------GCAGAG-CACUAAUCAACGUUUAGUGGCUGCCACUAGGAGGCACGAAUGCCGCAAAGUCAA----------- ((((................(((........)----------------))...(-(...........((((((((...)))))))).((((....))))))...)))).----------- ( -21.50) >DroSec_CAF1 160352 91 + 1 UGGCAAAAUCAUUUACAUUCGCAAUUACUUUU-----------------GCGAG-CACUAAUCAACGUUUAGUGGCUGCCACUAGGAGGCACGAAUGCCACAAACUCAA----------- (((((............(((((((......))-----------------)))))-((((((.......))))))..)))))......((((....))))..........----------- ( -25.00) >DroSim_CAF1 161221 91 + 1 UGGCAAAAUCAUUUACAUUCGCAUUUACUUUG-----------------CAGAG-CACUAAUCAACGUUUAGUGGCUGCCACUAGGAGGCACGAAUGCCGCAAAGUCAA----------- ((((................(((.......))-----------------)...(-(...........((((((((...)))))))).((((....))))))...)))).----------- ( -21.20) >DroEre_CAF1 180205 106 + 1 UGGCAAAAUCAUUUACAUUCGCAUUUACUUUU--GCCUUUCCAUCUCUACAGAGCCACUAAUCAACGUUUAGUGGCUGCCACU-GGAGGCACGAAUGCCAGAAAGCCAA----------- ((((................(((........)--)).((((........((((((((((((.......)))))))))....))-)..((((....)))).)))))))).----------- ( -29.20) >DroYak_CAF1 166819 107 + 1 UGGCAAAAUCAUUUACAUUCGCAUUUACUUUUCCGCCUUGCCAUCUCUGCAGAG-CACUAAUCAACGUUUAGUGGCUGCCACU-GGAGGCACGAAUGCCACAAAGUCAA----------- (((((...............((............))(.((((.(((..((((..-((((((.......)))))).))))....-))))))).)..))))).........----------- ( -25.00) >DroAna_CAF1 155535 90 + 1 UGGCGAAAUCAUUUACAUUU----------------------------ACAGUG-CACUAAUCAACGUUUAGUGGCAGCCACUA-GAGGCCUGAAUGGGGAAAAAAUAAAAAAUGUGCCU .((((....(((((.(((..----------------------------...)))-..(((.(((.(.((((((((...))))))-)).)..))).)))............))))))))). ( -18.90) >consensus UGGCAAAAUCAUUUACAUUCGCAUUUACUUUU_________________CAGAG_CACUAAUCAACGUUUAGUGGCUGCCACUAGGAGGCACGAAUGCCACAAAGUCAA___________ ...............((((((...............................((.((((((.......)))))).))(((.......))).))))))....................... (-15.06 = -14.82 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:33 2006