Locus 958

Sequence ID 3R_DroMel_CAF1
Location 3,140,333 – 3,140,433
Length 100
Max. P 0.977152
window1535

overview

Window 5

Location 3,140,333 – 3,140,433
Length 100
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 95.00
Mean single sequence MFE -34.51
Consensus MFE -30.57
Energy contribution -31.13
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -3.32
Structure conservation index 0.89
SVM decision value 1.79
SVM RNA-class probability 0.977152
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3140333 100 - 27905053
GCCAAUAAAUGUCAACGGUUUUGGCGCAUUAACAUAACAGCUACGCCGAAUUCGUUGACAGGUUACUGCUUUUUCAUCGAGCGCAAGACCUACCUGGGCA
(((.......(((((((..(((((((.................)))))))..)))))))(((((..(((((.......)))))...))))).....))). ( -34.13)
>DroSec_CAF1 16158 100 - 1
GCCAAUAAAUGUCAACGGUUUUGGCGCAUUAACAUAACAGCUACGCCGAAUUCGUUGACAGGUUACUGCUUUUUCUUCGAGCGCAAGACCUACCUGGGCA
(((.......(((((((..(((((((.................)))))))..)))))))(((((..(((((.......)))))...))))).....))). ( -34.13)
>DroSim_CAF1 17385 100 - 1
GCCAAUAAAUGUCAACGGUUUUGGCGCAUUAACAUAACAGCUACGCCGAAUUCGUUGACAGGUUACUGCUUUUUCUUCGAGCGCAAGACCUACCUGGGCA
(((.......(((((((..(((((((.................)))))))..)))))))(((((..(((((.......)))))...))))).....))). ( -34.13)
>DroEre_CAF1 17836 99 - 1
GCCAAUAAAUGUCAACGGUUUUGGCGCAUUAACAUAACAGCUACGUCGAAUUCGUUGACAGGUG-GGGCUUUUUCUUGGAGCACCAGACCUACCUGGCCA
((((.....((((((((..(((((((.................)))))))..))))))))((((-(((((((.....)))))......)))))))))).. ( -35.63)
>consensus
GCCAAUAAAUGUCAACGGUUUUGGCGCAUUAACAUAACAGCUACGCCGAAUUCGUUGACAGGUUACUGCUUUUUCUUCGAGCGCAAGACCUACCUGGGCA
(((.......(((((((..(((((((.................)))))))..)))))))(((((..(((((.......)))))...))))).....))). (-30.57 = -31.13 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:38 2006