Locus 9568

Sequence ID 3R_DroMel_CAF1
Location 25,272,037 – 25,272,146
Length 109
Max. P 0.690489
window15299

overview

Window 9

Location 25,272,037 – 25,272,146
Length 109
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 73.94
Mean single sequence MFE -21.80
Consensus MFE -14.53
Energy contribution -15.01
Covariance contribution 0.48
Combinations/Pair 1.12
Mean z-score -1.40
Structure conservation index 0.67
SVM decision value 0.33
SVM RNA-class probability 0.690489
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25272037 109 - 27905053
AAAGUCGAUAGACGAUUGAACUGAACUGAACU-GAAUCCCGUCGACGGCUUAGCGGCAAAAUCAAUGACACAAUAAAUAUUUGUGCAGCCCUUAACCGUUGAGUGUUUAA
...((((((....((((.(............)-.))))..)))))).(((((((((.........((.(((((.......)))))))........)))))))))...... ( -24.93)
>DroPse_CAF1 133787 82 - 1
---------------------------GAGCU-CAAGACGGGACACGGCUUAGCGGCAAAAUCAAUGACACAAUAAAUAUUUGUGCAGCUCUUAACCGUUGAGUGUUUAA
---------------------------((((.-.....((.....))(((((((((.........((.(((((.......)))))))........))))))))))))).. ( -19.53)
>DroWil_CAF1 215008 82 - 1
AAU----------GGUUG-----------------AGCCU-GGGAUGGCUUAGCGAGAAAAUCAAUGACACAAUAAAUAUUUGUGCAGCGCUUAAGCCCCAAGUGUUUAA
...----------..(((-----------------(((((-.((..(((((((((..........((.(((((.......))))))).))).)))))))).)).)))))) ( -22.20)
>DroAna_CAF1 125096 86 - 1
AA------------------------UGAGCUGGAAGCCUGUCGACGGCUUAGCGGCAAAAUCAAUGACACAAUAAAUAUUUGUGCAGCCCUUAACCGUCGAGUGUUUAA
..------------------------(((((.((...))..(((((((.((((.(((........((.(((((.......)))))))))).)))))))))))..))))). ( -22.80)
>DroPer_CAF1 134799 82 - 1
---------------------------GAGCU-CAAGACGGGACACGGCUUAGCGGCAAAAUCAAUGACACAAUAAAUAUUUGUGCAGCUCUUAACCGUUGAGUGUUUAA
---------------------------((((.-.....((.....))(((((((((.........((.(((((.......)))))))........))))))))))))).. ( -19.53)
>consensus
AA_________________________GAGCU_CAAGCCGGGAGACGGCUUAGCGGCAAAAUCAAUGACACAAUAAAUAUUUGUGCAGCCCUUAACCGUUGAGUGUUUAA
...............................................(((((((((.........((.(((((.......)))))))........)))))))))...... (-14.53 = -15.01 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:19 2006