Locus 9548

Sequence ID 3R_DroMel_CAF1
Location 25,231,059 – 25,231,162
Length 103
Max. P 0.567692
window15271

overview

Window 1

Location 25,231,059 – 25,231,162
Length 103
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 86.60
Mean single sequence MFE -32.25
Consensus MFE -25.61
Energy contribution -25.25
Covariance contribution -0.36
Combinations/Pair 1.12
Mean z-score -1.96
Structure conservation index 0.79
SVM decision value 0.07
SVM RNA-class probability 0.567692
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25231059 103 - 27905053
AUUCCUCGUUUUAGCAGAGCAAACA-AACGUCAAGCGUUGCGUAUACGCAACGUGAGCCGAUGUCUAGCUUUCCAGCCAACAGGCAAAAGUUACUGU---UG---UUAUU
.......((..((((((........-.(((((..((((((((....)))))))).....))))).(((((((...(((....))).)))))))))))---))---..)). ( -29.60)
>DroPse_CAF1 94467 108 - 1
AUUCGUCGUUUUAGCAGAGCAAACA-AAUGUCAAGCGUUGCGUAUACGCAACGUGAGCCGUUGUCUAGCUUUUCAGCCGCAAGGCAAA-GUUGCUGCCAAUGUGGUUGUU
...............(((((..(((-(..((...((((((((....))))))))..))..))))...))))).((((((((.((((..-.....))))..)))))))).. ( -35.20)
>DroSec_CAF1 89507 103 - 1
AUUCUCCGUUUUAGCAGAGCAAACA-AACGUCAAGCGUUGCGUAUACGCAACGUGAGCCGCUGUCUAGCUUUCCAGCCACCAGGCAAAAGUUACUGU---UG---UCAUU
...........((((((.....(((-..((.(..((((((((....))))))))..).)).))).(((((((...(((....))).)))))))))))---))---..... ( -27.50)
>DroEre_CAF1 92262 110 - 1
AUUCCUCAUUUUAGCAGAGCAAACAAAACGUCAAGCGUUGCGUAUACGCAACGUGAGCCGCUGUCUAGCCUUCCAGCCAGCAGGCAAAAGCUACUGUUGUUGUUGUUCUU
.......((..(((((((((..............((((((((....))))))))..(((((((.((........)).)))).)))....))).))))))..))....... ( -34.10)
>DroYak_CAF1 93277 106 - 1
AUUCCUCAUUUUAGCAAAGCAAACA-AACGUCAAGCGUUGCGUAUACGCAACGUGAGCCGCUGUCUAGCCUGCCAGGCACCAGGCAAAAGCUACUGCUGUUG---UUAUU
...........((((((((((....-........((((((((....)))))))).(((...(((((.(((.....)))...)))))...)))..)))).)))---))).. ( -31.90)
>DroPer_CAF1 95462 108 - 1
AUUCGUCGUUUUAGCAGAGCAAACA-AAUGUCAAGCGUUGCGUAUACGCAACGUGAGCCGUUGUCUAGCUUUUCAGCCGCAAGGCAAA-GUUGCUGCCAAUGUGGUUGUU
...............(((((..(((-(..((...((((((((....))))))))..))..))))...))))).((((((((.((((..-.....))))..)))))))).. ( -35.20)
>consensus
AUUCCUCGUUUUAGCAGAGCAAACA_AACGUCAAGCGUUGCGUAUACGCAACGUGAGCCGCUGUCUAGCUUUCCAGCCACCAGGCAAAAGUUACUGC___UG___UUAUU
.............(((((((..(((...((.(..((((((((....))))))))..).)).)))...........(((....)))....))).))))............. (-25.61 = -25.25 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:55 2006