Locus 9545

Sequence ID 3R_DroMel_CAF1
Location 25,221,384 – 25,221,486
Length 102
Max. P 0.907322
window15267

overview

Window 7

Location 25,221,384 – 25,221,486
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 98.24
Mean single sequence MFE -18.92
Consensus MFE -17.52
Energy contribution -17.28
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -1.55
Structure conservation index 0.93
SVM decision value 1.05
SVM RNA-class probability 0.907322
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25221384 102 - 27905053
AAUUCACUAAAUUCGGCUGCCAAAUGCUUCACAUUCUCUAACAUUUAUUUGACGUCAAAUGGCUUUCGAAUGAUCGACCUCAUCGGUAAACGAAAGCAUUUU
..............(((........))).................((((((....))))))(((((((....(((((.....)))))...)))))))..... ( -18.50)
>DroSec_CAF1 79642 102 - 1
AAUUCACUAAAUUCGGCUGCCAAAUGCUUCACAUUCUCUAACAUUUAUUUGACGUCAAAUGGCUUUCGAAUGAUCGACCUCAUCGGUAAACGAAAGCAUUUU
..............(((........))).................((((((....))))))(((((((....(((((.....)))))...)))))))..... ( -18.50)
>DroSim_CAF1 79994 102 - 1
AAUUCACUAAAUUCGGCUGCCAAAUGCUUCACAUUCUCUAACAUUUAUUUGACGUCAAAUGGCUUUCGAAUGAUCGACCUCAUCGGUAAACGAAAGCAUUUU
..............(((........))).................((((((....))))))(((((((....(((((.....)))))...)))))))..... ( -18.50)
>DroEre_CAF1 82801 102 - 1
AAUUCACUAAAUUCGACAGCCAAAUGCUUCACAUUCUCUAACAUUUAUUUGACGUCAAAUGGCUUUCGAAUGAUCGACCUCAUCGGUAAACGAAAGCAUUUC
..(((.....((((((.(((((((((...............)))))(((((....))))))))).)))))).(((((.....)))))....)))........ ( -19.56)
>DroYak_CAF1 82773 102 - 1
AAUUCACUAAAUUCGACAGCCAAAUGCUUCACAUUCUCUAACAUUUAUUUGACGUCAAAUGGCUUUCGAAUGAUCGACCUCAUCGGUAAACGAAAGCAUUUC
..(((.....((((((.(((((((((...............)))))(((((....))))))))).)))))).(((((.....)))))....)))........ ( -19.56)
>consensus
AAUUCACUAAAUUCGGCUGCCAAAUGCUUCACAUUCUCUAACAUUUAUUUGACGUCAAAUGGCUUUCGAAUGAUCGACCUCAUCGGUAAACGAAAGCAUUUU
..(((.....((((((..((((((((...............)))))(((((....))))))))..)))))).(((((.....)))))....)))........ (-17.52 = -17.28 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:51 2006