Locus 9532

Sequence ID 3R_DroMel_CAF1
Location 25,190,745 – 25,190,836
Length 91
Max. P 0.532042
window15249

overview

Window 9

Location 25,190,745 – 25,190,836
Length 91
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 82.95
Mean single sequence MFE -21.40
Consensus MFE -15.79
Energy contribution -15.76
Covariance contribution -0.03
Combinations/Pair 1.12
Mean z-score -1.46
Structure conservation index 0.74
SVM decision value -0.00
SVM RNA-class probability 0.532042
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25190745 91 + 27905053
AAUGCAGCUGUGCGAUUAAAUUAAUAACUGCA-AAGGAUUAAAAAACUAACAGCCAUGGCAAGGACAUGGCGCCAAGCCAGCUGCUCCAGCU------
...(((((((.((.......(((((..((...-.)).)))))..........((((((.......)))))).....))))))))).......------ ( -27.20)
>DroVir_CAF1 70902 91 + 1
AAUGCAGCUGUGCGAUUAAAUUAAUAACUGCACAAGGAUUAAAAAACUAACAGCCAUGGCAGGGACAUG-CGCUCAGCCAGCUGCUGUUCCU------
...(((((((.((..............((((.((.((.(((......)))...)).))))))(..(...-.)..).))))))))).......------ ( -23.90)
>DroPse_CAF1 54022 93 + 1
AAUGCAGCUGUGCGAUUAAAUUAAUAACUGCA-AAGGAUUAAAAAACUAACAGCCAUGGCAAGGAA----GGACAAGCCGGUUGCUACUGGCCCUGCC
..(((.((((((((.(((......))).))).-.((..........)).)))))....))).((.(----((....((((((....))))))))).)) ( -21.80)
>DroGri_CAF1 152524 91 + 1
AAUGCAGCUGUGCGACUAAAUUAAUAACUGCAAAAGGAUUAAAAAACUAACAGCCAUGGCAAGGACAUG-CGCUCAACCAGCUGCUACUGCU------
...(((((((((((..((......))..))))...................(((((((.......))))-.)))....))))))).......------ ( -20.50)
>DroWil_CAF1 130570 88 + 1
AAUGCAGCUGUGCGAUUAAAUUAAUAACUGCA-AAGGAUUAA-AAACUAACUACCAUGGCAAGGACAUUG-ACUAAGCCAUCUGCUGGA-CU------
...((((((.((((.(((......))).))))-.))......-............(((((.((.......-.))..)))))))))....-..------ ( -14.40)
>DroPer_CAF1 55012 93 + 1
AAUGCAGCUGUGCGAUUAAAUUAAUAACUGCA-AAGGAUUAAAAAACUAACAGCCAUGGCAAGGAA----GGACAAGCCGGCUGCUACUGGCCCUGCC
...((((((.((((.(((......))).))))-.))................(((((((((..(..----((.....))..)))))).)))).)))). ( -20.60)
>consensus
AAUGCAGCUGUGCGAUUAAAUUAAUAACUGCA_AAGGAUUAAAAAACUAACAGCCAUGGCAAGGACAUG_CGCCAAGCCAGCUGCUACUGCU______
...(((((((.((...............(((....((.(((......)))...))...)))...............)))))))))............. (-15.79 = -15.76 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:36 2006