Locus 9524

Sequence ID 3R_DroMel_CAF1
Location 25,168,867 – 25,168,964
Length 97
Max. P 0.830077
window15239

overview

Window 9

Location 25,168,867 – 25,168,964
Length 97
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 90.83
Mean single sequence MFE -19.80
Consensus MFE -15.70
Energy contribution -15.95
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.01
Structure conservation index 0.79
SVM decision value 0.71
SVM RNA-class probability 0.830077
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25168867 97 - 27905053
AAACCAAACACUAGUGUUGACUGCAAAAAUGG--ACAAAAAGAUGAAAAGGGGGAACACCCCGAAUAUCAGCUUUAUGGCAGUUGCACAAAAAGCGCGC
.............(((((...(((((...((.--.((.((((.(((...((((.....)))).....))).)))).)).)).))))).....))))).. ( -24.70)
>DroSec_CAF1 27434 90 - 1
AAACAAAACACCAGUGUUGACUGCAAAAAUGG--ACAAAAAGA-------AGGGAACACCCCGAAUAUCAGCUUUAUGGCAGUUGCACAAAAAGCGCGC
..........(((...(((....)))...)))--.........-------.(((.....)))........(((((.((((....)).)).))))).... ( -17.60)
>DroSim_CAF1 27599 90 - 1
AAACAAAACACCAGUGUUGACUGCAAAAAUGG--ACAAAAAGA-------AGGGAACACCCCGAAUAUCAGCUUUAUGGCAGUUGCACAAAAAGCGCGC
..........(((...(((....)))...)))--.........-------.(((.....)))........(((((.((((....)).)).))))).... ( -17.60)
>DroYak_CAF1 28215 92 - 1
AAACAAAACACUAGUGUUGACUGCAAAAAUGAAGAAAAAAAGA-------AGGAUACACCCCGAGUAUCAGCUUUAUGGCAGUUGCACAAAAAGCGCGC
.............((((.((((((....((((((.........-------..(((((.......)))))..)))))).))))))))))........... ( -19.32)
>consensus
AAACAAAACACCAGUGUUGACUGCAAAAAUGG__ACAAAAAGA_______AGGGAACACCCCGAAUAUCAGCUUUAUGGCAGUUGCACAAAAAGCGCGC
......((((....))))....((...........................(((.....)))........(((((.((((....)).)).))))))).. (-15.70 = -15.95 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:27 2006