| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,161,262 – 25,161,355 |
| Length | 93 |
| Max. P | 0.513159 |
| Location | 25,161,262 – 25,161,355 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 91.22 |
| Mean single sequence MFE | -20.74 |
| Consensus MFE | -19.11 |
| Energy contribution | -18.99 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.92 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513159 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25161262 93 + 27905053 UUUGCCCAAGGCCAGGUGACAUUGAUGGCAACUUGGCCUUUUCCACACAA-ACUUGUCCCUUUAUGAAAUUAAUCAGCAAGAAAAGCGUCACAU ...((..((((((((((..((....))...))))))))))..........-.(((((....(((......)))...)))))....))....... ( -21.10) >DroSec_CAF1 19983 93 + 1 UUCGCCCGAGGCCAGGUGACAUUGAUGGCAACUUGGCCUUUUCCAUACAA-ACUUGUCCCUUUAUGAAAUUAAUCAGCAAGAAAAGCGUCACAU ..(((..((((((((((..((....))...))))))))))..........-.(((((....(((......)))...)))))....)))...... ( -22.90) >DroSim_CAF1 17425 93 + 1 UUCGCCCAAGGCCAGGUGACUUUUAUGGCAACUUGGCCUUUUCCAUACAA-ACUUGUCCCUUUUUGAAAUUAAUCAGCAAGAAAAGCGUCACAU ..(((..((((((((((..((.....))..))))))))))..........-.(((((.......(((......))))))))....)))...... ( -22.31) >DroEre_CAF1 20991 93 + 1 UUCGCCCAGGGCCAGGUGACAUUGAUGACGGCCUGGCCUUUUCCACACAA-ACUUGUCCCUUUAUGAAUUUAAUCACCAAGAAGAGCAUCACAU ...((.(((((((((((..((....))...))))))))))..........-.((((.....(((......)))....))))..).))....... ( -20.50) >DroYak_CAF1 20395 94 + 1 UUCGCCCAAGGCCAGGUGACAUUGAUGGCAGCUCGGCCUUUUCCACACAAAACUUGUCCCUUUAUGAAAUUAAUCACCAAGAAGAGCAUCGCAU ...((.(((((((((.((.((....)).)).)).))))))............((((.....(((......)))....))))..).))....... ( -16.90) >consensus UUCGCCCAAGGCCAGGUGACAUUGAUGGCAACUUGGCCUUUUCCACACAA_ACUUGUCCCUUUAUGAAAUUAAUCAGCAAGAAAAGCGUCACAU ...((..((((((((((..(......)...))))))))))............(((((.......(((......))))))))....))....... (-19.11 = -18.99 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:23 2006