Locus 950

Sequence ID 3R_DroMel_CAF1
Location 3,130,395 – 3,130,507
Length 112
Max. P 0.955509
window1517

overview

Window 7

Location 3,130,395 – 3,130,507
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 93.72
Mean single sequence MFE -42.16
Consensus MFE -37.66
Energy contribution -37.86
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.89
SVM decision value 1.46
SVM RNA-class probability 0.955509
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3130395 112 - 27905053
GCCUUUGGCGGGCUGCAACUCUCGUUGUCUUCAGUUCGCUUGGGCUUGGCCAAAUCUAUUGGUCGCGGUGCCGCGCUCACGCUCGCGUCCGUGUCCGUGUCCACAUCCGCAU
((((..(((((((((((((....))))....))))))))).))))..((((((.....))))))((((((.((((..((((........))))..))))....)).)))).. ( -44.20)
>DroSec_CAF1 5843 112 - 1
GCCUUUGGCGGGCUGCAACUCUCGUUGUCUUCAGUUCGCUUGGGCUUGGCCAAAUCUAUUGGUCGCGGUGCCGCGCUCACGCUCGCGUCCGUGUCCGUGUCCACAUCCGCAU
((((..(((((((((((((....))))....))))))))).))))..((((((.....))))))((((((.((((..((((........))))..))))....)).)))).. ( -44.20)
>DroSim_CAF1 6413 112 - 1
GCCUUUGGCGGGCUGCAACUCUCGUUGUCUUCAGUUCGCUUGGGCUUGGCCAAAUCUAUUGGUCGCGGUGCCGCGCUCACGCUCGCGUCCGUGUCCGUGUCCACAUCCGCAU
((((..(((((((((((((....))))....))))))))).))))..((((((.....))))))((((((.((((..((((........))))..))))....)).)))).. ( -44.20)
>DroEre_CAF1 6106 106 - 1
GCCUUUGGCGGGCUGCAACUCUCGUUGCCUUCAGUUCGCUCGGGCUUGGCCAAAUCUAUUGGUCGCGGUGCCGCGCUCACGCUCGCGUCCGUG------UCCACAUCCGCAU
((((..(((((((((((((....)))))....)))))))).))))..((((((.....))))))((((((..((((..(((....)))..)))------)...)).)))).. ( -42.10)
>DroYak_CAF1 6229 103 - 1
GCCUUUGGCGGGCUGCAACUCUCGUUGUCUUCAGUUCGCUCGGACUUGGCCAAAUCUAUUGGUCGCGGUGCCGCGCUCACGCUCGCGUCCGUG------CCCACAUCCA---
(((((((((((((((((((....))))....)))))))).))))...))).........(((.((((((((.(((....)))..))).)))))------.)))......--- ( -36.10)
>consensus
GCCUUUGGCGGGCUGCAACUCUCGUUGUCUUCAGUUCGCUUGGGCUUGGCCAAAUCUAUUGGUCGCGGUGCCGCGCUCACGCUCGCGUCCGUGUCCGUGUCCACAUCCGCAU
((((..(((((((((((((....))))....))))))))).))))..((((((.....))))))(((((((.(((....)))..))).)))).................... (-37.66 = -37.86 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:21 2006