| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,095,357 – 25,095,458 |
| Length | 101 |
| Max. P | 0.682060 |
| Location | 25,095,357 – 25,095,458 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 97.34 |
| Mean single sequence MFE | -21.90 |
| Consensus MFE | -21.80 |
| Energy contribution | -21.80 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.53 |
| Structure conservation index | 1.00 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.682060 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25095357 101 - 27905053 CAUUUUGCGCGCAUUUCUACACCAAAAAAAAAAAUCAUAAGAACAAAAAGCACCACCGGCUGCGUUUGCCAUUGCCACUGAUCCUUUAGUGGCAGAUCCUG .....(((......((((.....................))))......))).....(((.......))).((((((((((....))))))))))...... ( -21.00) >DroSec_CAF1 24272 99 - 1 CAUUUUGCGCGCAUUUCUACACCAAAA--AAAAAUCAUAAGAACAAAAAGCACCACCGGCUGCGUUUGCCAUUGCCACUGAUCCUUUAGUGGCAGAUCCUG .....(((......((((.........--..........))))......))).....(((.......))).((((((((((....))))))))))...... ( -21.11) >DroSim_CAF1 25216 98 - 1 CAUUUUGCGCGCAUUUCUACACCAAAA---AAAAUCGUAAGAACAAAAAGCACCACCGGCUGCGUUUGCCAUUGCCACUGAUCCUUUAGUGGCAGAUCCUG ......((((((...............---....((....))......(((.......)))))))..))..((((((((((....))))))))))...... ( -23.60) >consensus CAUUUUGCGCGCAUUUCUACACCAAAA__AAAAAUCAUAAGAACAAAAAGCACCACCGGCUGCGUUUGCCAUUGCCACUGAUCCUUUAGUGGCAGAUCCUG ......((((((......................((....))......(((.......)))))))..))..((((((((((....))))))))))...... (-21.80 = -21.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:35:44 2006