Locus 9433

Sequence ID 3R_DroMel_CAF1
Location 24,997,989 – 24,998,085
Length 96
Max. P 0.627555
window15110

overview

Window 0

Location 24,997,989 – 24,998,085
Length 96
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 79.61
Mean single sequence MFE -15.63
Consensus MFE -11.03
Energy contribution -11.03
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.24
Structure conservation index 0.71
SVM decision value 0.19
SVM RNA-class probability 0.627555
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24997989 96 - 27905053
ACAGACGAUUCUCAUUUGCUUUUGUGCUCAAUCAAAGAAGCUUAACUGUGAGAAUACCAAAAUGAAUACAAGAUACAAAUAAACGUAGAGCGAAA-------A-------
.....((((((((((..((((((.((......)).))))))......))))))))..................(((........)))...))...-------.------- ( -13.90)
>DroVir_CAF1 21536 108 - 1
ACAA--AACUCUCAUUUGCUUUUGUGCUCAAUCAAAGAAGCUUAACUGUGAGAAUAACAAAAUGAAUACAAAACGUGUUUGUACUUAAAACAAAAUGAAACAAAAUCAUU
....--...((((((..((((((.((......)).))))))......))))))........(..(((((.....)))))..)...........(((((.......))))) ( -16.10)
>DroPse_CAF1 20414 99 - 1
ACAGAGAACUCUCAUUUGCUUUUGUGCUCAAUCAAAGAAGCUUAACUGUGAGAAUAACAAAACGAAUACAAGAUACAAAUAACUGUAGAGCAAGA-------AAAU----
...(((....))).(((((((((((.((((.....((........)).))))....)))).............((((......))))))))))).-------....---- ( -15.40)
>DroMoj_CAF1 72432 106 - 1
ACAAAAAACUCUCAUUUGCUUUUGUGCUCAAUCAAAGAAGCUUAACUGUGAGAAUAAGAAAGUGAAUACAAAAUGUGUUUAUACUUAAAAAAUAAACAUACAA----AUG
.........((((((..((((((.((......)).))))))......)))))).((((...((((((((.....)))))))).))))................----... ( -17.90)
>DroAna_CAF1 25292 97 - 1
ACCGACAAUUCUCAUUUGCUUUUGUGCUCAAUCAAAGAAGCUUAACUGUGAGAAUACCAAAAUGAAUACAAGAUACAAAUAAAUGUAGAGCGAAA-G-----A-------
.......((((((((..((((((.((......)).))))))......))))))))..................((((......))))...(....-)-----.------- ( -15.10)
>DroPer_CAF1 30124 99 - 1
ACAGAGAACUCUCAUUUGCUUUUGUGCUCAAUCAAAGAAGCUUAACUGUGAGAAUAACAAAACGAAUACAAGAUACAAAUAACUGUAGAGCAAGA-------AAAU----
...(((....))).(((((((((((.((((.....((........)).))))....)))).............((((......))))))))))).-------....---- ( -15.40)
>consensus
ACAGACAACUCUCAUUUGCUUUUGUGCUCAAUCAAAGAAGCUUAACUGUGAGAAUAACAAAAUGAAUACAAGAUACAAAUAAACGUAGAGCAAAA_______A_______
.........((((((..((((((.((......)).))))))......))))))......................................................... (-11.03 = -11.03 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:34 2006