| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,982,629 – 24,982,749 |
| Length | 120 |
| Max. P | 0.500000 |
| Location | 24,982,629 – 24,982,749 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.67 |
| Mean single sequence MFE | -39.25 |
| Consensus MFE | -39.49 |
| Energy contribution | -38.83 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.27 |
| Structure conservation index | 1.01 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24982629 120 + 27905053 GCCAGCAACUGAAGGUCCUUAGCGUUAUUGAUGGCCAGUCGUAUGAGCCGCUGAAGGAUGUCACUAUCGGUGGAAUUAUUGUAUUCCAGCACACUGGCAAAGCAGAGGACCAGGAGCUCG ...(((..((...(((((((.((..........((((((.((.(((.((......))...))).....(.((((((......)))))).)))))))))...)).)))))))))..))).. ( -37.72) >DroSim_CAF1 4864 120 + 1 GUCAGCAACUGAAGGUCCUUAGCGUUAUUGAUGGCCAGUCGUAUGAGCCGCUGAAGGAUGUCACCAUCGGUGGAAUUAUUGUAUUCCAGCACACUGGCAAAGCAGAGGACCAGGAGCUAG ...(((..((...(((((((.((..........((((((.((.......(((((.((......)).)))))(((((......)))))...))))))))...)).)))))))))..))).. ( -39.12) >DroYak_CAF1 9809 120 + 1 GUCAGCAACUGAAGGUCCUUAGCGUCAUUGAUGGACAAUCGUAUGAGCCGCUGAAGGAUGUCACCAUCGGUGGAAUUAUUGUAUUCCAGCACACUGGCAAAGCAGAGGACCAGGAGCUCG ...(((..((...(((((((.((.((((((((.....)))).))))((((.((...((((....))))(.((((((......)))))).).)).))))...)).)))))))))..))).. ( -40.90) >consensus GUCAGCAACUGAAGGUCCUUAGCGUUAUUGAUGGCCAGUCGUAUGAGCCGCUGAAGGAUGUCACCAUCGGUGGAAUUAUUGUAUUCCAGCACACUGGCAAAGCAGAGGACCAGGAGCUCG ...(((..((...(((((((.((.((((((((.....)))).))))((((.((...((((....))))(.((((((......)))))).).)).))))...)).)))))))))..))).. (-39.49 = -38.83 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:32 2006