Locus 9426

Sequence ID 3R_DroMel_CAF1
Location 24,974,872 – 24,974,992
Length 120
Max. P 0.743832
window15099

overview

Window 9

Location 24,974,872 – 24,974,992
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 85.72
Mean single sequence MFE -48.63
Consensus MFE -39.74
Energy contribution -38.69
Covariance contribution -1.05
Combinations/Pair 1.34
Mean z-score -2.06
Structure conservation index 0.82
SVM decision value 0.46
SVM RNA-class probability 0.743832
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24974872 120 + 27905053
CCAGAAGACUUGGCGCCUGAACGAGCGCCACUACGGUGGACUCACUGGCCUGAACAAGGCCGAGACCGCCGCCAAGUACGGCGAGGCCCAGGUGCAGAUCUGGCGUCGCAGCUUCGACAC
...((((((((((((.(.....(((..((((....)))).))).(((((((.....))))).))...).))))))))...((((.(((.((((....))))))).))))..))))..... ( -54.60)
>DroVir_CAF1 1587 120 + 1
UUAUAAGACCUGGCGCCUGAAUGAGCGUCACUAUGGCGGUUUGACUGGCCUGAAUAAGGCCGAGACCGCUGCCAAGUACGGCGAGGCUCAGGUGCAAAUCUGGCGACGCAGCUUCGACAC
.....(((....((((((((....((.((.....((((((((...((((((.....))))))))))))))(((......))))).))))))))))...)))(((......)))....... ( -47.40)
>DroGri_CAF1 299 120 + 1
CCAGAAGACGUGGCGUCUCAAUGAACGUCACUAUGGCGGUUUGACGGGGCUGAAUAAGGCGGAGACCGCCGCCAAGUAUGGUGAAGCCCAGGUGCAGAUCUGGAGACGUAGCUUCGAUAC
...((((.(...(((((((.......(((.....)))((((((((.(((((......(((((...)))))((((....))))..)))))..)).))))))..))))))).)))))..... ( -47.10)
>DroWil_CAF1 1516 120 + 1
CCAAAAGACUUGGCGUCUCAAUGAACGUCACUAUGGUGGUCUAACCGGUCUGAACAAGGCCGAGACGGCUGCCAAAUACGGUGAGGCCCAGGUGCAAAUCUGGCGUCGCAGCUUCGACAC
.......((((((.((((((.....(((.....(((..(((....((((((.....))))))....)))..)))...))).))))))))))))((.......))((((......)))).. ( -42.20)
>DroMoj_CAF1 1583 120 + 1
CUACAAGACCUGGCGCCUGAAUGAGCGUCACUAUGGUGGUUUGACCGGCCUGAACAAGGCUGAGACCGCCGCCAAAUAUGGCGAGGCUCAGGUGCAAAUCUGGCGUCGCAGCUUCGACAC
....(((...(((((((.....((((.((.....((((((((...((((((.....))))))))))))))((((....)))))).))))((((....)))))))))))...)))...... ( -50.30)
>DroAna_CAF1 1899 120 + 1
CCAGAAGACCUGGCGUCUGAACGAGCGCCACUACGGUGGACUCACUGGCCUGAACAAGGCCGAGACGGCCGCCAAGUACGGUGAGGCCCAAGUACAGAUCUGGCGCCGCAGCUUCGACAC
...((((...(((((((.((.((((..((((....)))).)))((((((((......(((((...)))))(((......))).)))))..)))...).)).)))))))...))))..... ( -50.20)
>consensus
CCAGAAGACCUGGCGCCUGAAUGAGCGUCACUAUGGUGGUCUGACUGGCCUGAACAAGGCCGAGACCGCCGCCAAGUACGGCGAGGCCCAGGUGCAAAUCUGGCGUCGCAGCUUCGACAC
..........(((((((.....).))))))....((((((((...((((((.....))))))))))))))(((......)))(((((((((((....)))))).......)))))..... (-39.74 = -38.69 +  -1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:25 2006