Locus 9420

Sequence ID 3R_DroMel_CAF1
Location 24,950,871 – 24,950,972
Length 101
Max. P 0.826689
window15091

overview

Window 1

Location 24,950,871 – 24,950,972
Length 101
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 80.97
Mean single sequence MFE -16.92
Consensus MFE -10.98
Energy contribution -11.38
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.00
Structure conservation index 0.65
SVM decision value 0.70
SVM RNA-class probability 0.826689
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24950871 101 + 27905053
-AUUUACUCAUCGUACUUUCCCCAACCAAACUAACAAAUAAACUAGAACAAAAAGAGCCGCUGGUGGUUGGCUUCACCGCCAACACGACCACCCACUACAGA
-.........((((...........................(((((..............))))).((((((......)))))))))).............. ( -15.14)
>DroSec_CAF1 11827 101 + 1
-AUUUGCCCAUCGUACUUUCCCCAACAAAACUAGCAAAUAAACUAGAACAAAAAGAGCCGCUGGUGGUUGGCUUCACCGCCAACAAGACCACCCACUACAGA
-...........(((...............((((........))))................((((((((((......)))).....))))))...)))... ( -17.30)
>DroSim_CAF1 11873 101 + 1
-AUUUGCCCAUCGUACUUUCCCCAACCAAACUAACAUAUAAACUAGAACAAAAAGAACCGCUGGUGGUUGGCUUCACCGCCAACACGACCACCCACUACAGA
-.........((((...........................(((((..............))))).((((((......)))))))))).............. ( -15.14)
>DroEre_CAF1 11885 102 + 1
CGUUUAGCCAGCGUUCUUUUCCCAUCCAAACUAUAAAAUAAACCAGAACAAGAAGAGCCGCUGGUGGUUGGCUUCACCACCAACACAACCACCCACUACAUU
......((((((((((((((..............................))))))).))))))).(((((........))))).................. ( -21.11)
>DroYak_CAF1 11819 78 + 1
-AUU------------------CAUCCA-ACU----AGCAAACUAGAACAAAAAGAGCCGCUGGUUGUUGGCUUCACCACCAACACAACCACCCUCUACAGA
-...------------------......-.((----((....)))).......((((....((((((((((........)))..)))))))..))))..... ( -15.90)
>consensus
_AUUUACCCAUCGUACUUUCCCCAACCAAACUAACAAAUAAACUAGAACAAAAAGAGCCGCUGGUGGUUGGCUUCACCGCCAACACGACCACCCACUACAGA
.............................................................((((.((((((......))))))...))))........... (-10.98 = -11.38 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:34:17 2006