| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,123,660 – 3,123,814 |
| Length | 154 |
| Max. P | 0.997074 |
| Location | 3,123,660 – 3,123,776 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 92.01 |
| Mean single sequence MFE | -30.94 |
| Consensus MFE | -25.94 |
| Energy contribution | -26.06 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.84 |
| SVM decision value | 2.79 |
| SVM RNA-class probability | 0.997074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3123660 116 - 27905053 AAAAAUGUCCUUGCUGGAUUGCAAAG-CUGUCUUAACCUUUGCGAAGGGCAUUGUAAAAAUGAGACAGAAGUGCGGAUGGUCAAACAUUUGGACACGAAAAAAAGCAGAAAUUUAGU ............((((((((((....-((((((((...(((((((......)))))))..))))))))..((.((((((......)))))).))..........)))...))))))) ( -29.00) >DroSec_CAF1 11230 116 - 1 AAAAAUGUCCUUGCUGGAUUGCAAAG-CUGUCUUAACCUUUGCGAAGGGCAUUGCAGAAAUGAGACAGAAGUGCGGAUGGUCAAACAUUUGGACACGAAAAAAAGCAGAAAUUUAGU ............((((((((((....-((((((((...(((((((......)))))))..))))))))..((.((((((......)))))).))..........)))...))))))) ( -31.10) >DroSim_CAF1 16536 116 - 1 AAAAAUGUCCUUGCUGGAUUGCAAAG-CUGUCUUAACCUUUGCGAAGGGCAUUGCAGAAAUGAGACAGAAGUGCGGAUGGUCAAACAUUUGGACACGAAAAAAAGCAGAAAUUUAGU ............((((((((((....-((((((((...(((((((......)))))))..))))))))..((.((((((......)))))).))..........)))...))))))) ( -31.10) >DroEre_CAF1 11044 116 - 1 -ACACUAUUUUCAGGGCAUCUAAAGGUCUGUCUUAACCUUUGCAAAGGGCAUUGCAGAAAUGAGACAGAAGUGCGGAUGGUCAAACAUUUGGACACGAAAAAAAGCAGAAAUUUAGU -..((((.((((...((.........(((((((((...(((((((......)))))))..))))))))).((.((((((......)))))).))..........)).))))..)))) ( -32.20) >DroYak_CAF1 14968 116 - 1 AGCAAUAUCCUUGGUGAAUUGCAAAG-CUGUCUUAACCUUUGCGAAGGGCAUUGCAGAAAUGAGACAGAAGUGCGGAUGGUCAAACAUUUGGACACGAAAAAAAGCAGAAAUGUAGU .(((((..(....)...)))))....-((((((((...(((((((......)))))))..))))))))..((.((((((......)))))).))..........(((....)))... ( -31.30) >consensus AAAAAUGUCCUUGCUGGAUUGCAAAG_CUGUCUUAACCUUUGCGAAGGGCAUUGCAGAAAUGAGACAGAAGUGCGGAUGGUCAAACAUUUGGACACGAAAAAAAGCAGAAAUUUAGU ..................((((.....((((((((...(((((((......)))))))..))))))))..((.((((((......)))))).))..........))))......... (-25.94 = -26.06 + 0.12)
| Location | 3,123,697 – 3,123,814 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 86.26 |
| Mean single sequence MFE | -29.08 |
| Consensus MFE | -23.89 |
| Energy contribution | -24.83 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.833995 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3123697 117 - 27905053 A--AAAACCUUUGAAAACAUCUCUAAAAGUUCAUAUGCCCAAAAAUGUCCUUGCUGGAUUGCAAAGCUGUCUUAACCUUUGCGAAGGGCAUUGUAAAAAUGAGACAGAAGUGCGGAUGG .--..............((((((((.(((..(((.(......).)))..)))..)))).((((...((((((((...(((((((......)))))))..))))))))...)))))))). ( -28.10) >DroSec_CAF1 11267 119 - 1 AAUAAAACCUUGGAAAACAUCUCUAAAAGCUUAUAUGCCCAAAAAUGUCCUUGCUGGAUUGCAAAGCUGUCUUAACCUUUGCGAAGGGCAUUGCAGAAAUGAGACAGAAGUGCGGAUGG .................(((((......((......))........((((.....)))).(((...((((((((...(((((((......)))))))..))))))))...)))))))). ( -29.90) >DroSim_CAF1 16573 119 - 1 AAUAAAACCUUGGAAAACAUCUGUAAAAGCUUAUAUGCCCAAAAAUGUCCUUGCUGGAUUGCAAAGCUGUCUUAACCUUUGCGAAGGGCAUUGCAGAAAUGAGACAGAAGUGCGGAUGG .................((((((((....(((((((((((.......(((.....)))((((((((.(......).)))))))).)))))).......))))).......)))))))). ( -32.21) >DroYak_CAF1 15005 104 - 1 A-UAAAAG--------------CCAAAAGAUUAUAAGCAAAGCAAUAUCCUUGGUGAAUUGCAAAGCUGUCUUAACCUUUGCGAAGGGCAUUGCAGAAAUGAGACAGAAGUGCGGAUGG .-.....(--------------((((..(((.....((...))...))).)))))...(((((...((((((((...(((((((......)))))))..))))))))...))))).... ( -26.10) >consensus A_UAAAACCUUGGAAAACAUCUCUAAAAGCUUAUAUGCCCAAAAAUGUCCUUGCUGGAUUGCAAAGCUGUCUUAACCUUUGCGAAGGGCAUUGCAGAAAUGAGACAGAAGUGCGGAUGG .................(((((........................((((.....)))).(((...((((((((...(((((((......)))))))..))))))))...)))))))). (-23.89 = -24.83 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:08 2006