| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,918,871 – 24,919,028 |
| Length | 157 |
| Max. P | 0.958632 |
| Location | 24,918,871 – 24,918,970 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 87.19 |
| Mean single sequence MFE | -36.93 |
| Consensus MFE | -27.54 |
| Energy contribution | -28.78 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.777170 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24918871 99 + 27905053 CCAAGGAGGAGGUCCCUCCAAAGUGUCCUGGGAUGCGAGGAUUCGGAGUU------GGAGUCGGCGACACACCAGACUCAUAGUCGCAGUCUGAGCUCCGAAUAU ((..(((((.....)))))...(((((....)))))..))((((((((((------(((....(((((..............)))))..))).)))))))))).. ( -38.24) >DroSec_CAF1 32019 99 + 1 CCAAGGAGGAGGUGCCUCCAAAGUGUCCUGGGACGCGAGGAUUCGGAGUU------GGAGUCGGAGACACACCAGACUCAUAGUCGCAGUCUGAGCUCCGAAUAU ((..(((((.....)))))...(((((....)))))..))((((((((((------...((.(....)))..(((((((......).)))))))))))))))).. ( -41.60) >DroSim_CAF1 27747 105 + 1 CCAAGGAGGAGGUGCCUCCAAAGUGUCCUGGGACGCGAGGAUUCGGAGUUGGAGUUGGAGUCGGAGACACACCAGACUCAUAGUCGCAGUCUGAGCUCCGAAUAU ((..(((((.....)))))...(((((....)))))..))((((((((((.(((((((.((.(....))).))).)))).(((.......))))))))))))).. ( -42.50) >DroEre_CAF1 30697 92 + 1 C---GGAGGAGGUCGCUCCAAAGUGUCCUGGGAUGCGAGGAUUGGGAGUC------GCAGUU----CCACACCAGACUCAUAGUCGCAGUCUGAGCUCCGCAUAU (---(((((((.(((((((.....(((((.(....).)))))..)))).)------).).))----))....(((((((......).))))))...))))..... ( -31.70) >DroYak_CAF1 31118 92 + 1 C---GGAGGAGGUCGCUCCAAAGUGUCCUGGGAUGCAAGGAUUUGAAGUC------GGAGUU----CCACACCAGACUCAUAGUCGCAGUCUGAGCUCCGCAUAU (---((((..((..(((((...(((((....)))))...(((.....)))------))))).----))....(((((((......).))))))..)))))..... ( -30.60) >consensus CCAAGGAGGAGGUCCCUCCAAAGUGUCCUGGGAUGCGAGGAUUCGGAGUU______GGAGUCGG_GACACACCAGACUCAUAGUCGCAGUCUGAGCUCCGAAUAU ....(((((.....)))))...(((((....)))))....(((((((((..........((.(....)))..(((((((......).)))))).))))))))).. (-27.54 = -28.78 + 1.24)
| Location | 24,918,930 – 24,919,028 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 89.77 |
| Mean single sequence MFE | -22.44 |
| Consensus MFE | -19.78 |
| Energy contribution | -19.54 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.958632 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24918930 98 + 27905053 GACACACCAGACUCAUAGUCGCAGUCUGAGCUCCGAAUAUAAAUAUACUU------------UUUUUUCAUUCGCCCAUAGCUCGGUAAAAUGAAAUUUACUGGAGCGAA .......(((((((......).)))))).(((((((((..(((.......------------..)))..))))...........((((((......)))))))))))... ( -21.00) >DroSec_CAF1 32078 96 + 1 GACACACCAGACUCAUAGUCGCAGUCUGAGCUCCGAAUAUAAAUAUACUU------------UU-UUUCAUUCGC-CAUAGCUCGGUGAAAUGAAAUUUACUGGAGCGAA .......(((((((......).)))))).((((((.(((....)))....------------..-((((((((((-(.......)))).))))))).....))))))... ( -24.90) >DroSim_CAF1 27812 96 + 1 GACACACCAGACUCAUAGUCGCAGUCUGAGCUCCGAAUAUAAAUAUACUU------------UU-UUUCAUUCGC-CAUAGCUCGGUGAAAUGAAAUUUACUGGAGCGAA .......(((((((......).)))))).((((((.(((....)))....------------..-((((((((((-(.......)))).))))))).....))))))... ( -24.90) >DroEre_CAF1 30750 107 + 1 -CCACACCAGACUCAUAGUCGCAGUCUGAGCUCCGCAUAUAAAUAUACAUUUUUCUUUUCUUUU-UUGCAUUCGC-CAUAGCUCGGUAAAAUGAAAUUUACUGGAGCGAA -......(((((((......).)))))).((((((.(((....))).)........((((..((-((((....((-....))...)))))).))))......)))))... ( -21.10) >DroYak_CAF1 31171 102 + 1 -CCACACCAGACUCAUAGUCGCAGUCUGAGCUCCGCAUAUAAAUAUACUU----CUUUU-UUUU-UCUCAUUCGC-CAUAGCUCGGUAAAAUGAAAUUUACUGGAGCGAA -......(((((((......).)))))).(((((................----.....-....-........((-....))..((((((......)))))))))))... ( -20.30) >consensus GACACACCAGACUCAUAGUCGCAGUCUGAGCUCCGAAUAUAAAUAUACUU____________UU_UUUCAUUCGC_CAUAGCUCGGUAAAAUGAAAUUUACUGGAGCGAA .......(((((((......).)))))).(((((.......................................((.....))..((((((......)))))))))))... (-19.78 = -19.54 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:33:48 2006