| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,123,098 – 3,123,210 |
| Length | 112 |
| Max. P | 0.562338 |
| Location | 3,123,098 – 3,123,210 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.14 |
| Mean single sequence MFE | -34.22 |
| Consensus MFE | -14.35 |
| Energy contribution | -14.79 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.14 |
| Mean z-score | -3.14 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.562338 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3123098 112 - 27905053 ---A--GCUG--CCCGGCGAAGGGGUUAAAAAAUUUGUUUUGAUUUUUUUCCUCUAGAAACUCUUUGGUUUUUGUCUGCUCUGUUCU-UUUUUUUAAGCUUCAGAGCGAGACAGCAGCAG ---.--((((--(.......(((((..((((((((......)))))))).)))))(((((((....)))))))((((((((((..((-(......)))...)))))).)))).))))).. ( -37.10) >DroSec_CAF1 10690 112 - 1 ---A--GCUG--CCCGGCGAAGGGGUUAAAAAAUUUGUUUUGAUUUUUUUCCUCUAGAAACUCUUUGGUUUUUGUCCGCUCUGUUCG-UUUUUUCAAGCUUCAGAGCGAGACGGCAGCAG ---.--((((--((......(((((..((((((((......)))))))).)))))(((((((....)))))))((((((((((...(-(((....))))..))))))).))))))))).. ( -42.10) >DroSim_CAF1 15997 112 - 1 ---A--GCUG--CCCGGCGAAGGGGUUAAAAAAUUUGUUUUGAUUUUUUUCCUCUAGAAACUCUUUGGUUUUUGUCCGCUCUGUUCU-UUUUUUCAAGCUUCAGAGCGAGACGGCAGCAG ---.--((((--((......(((((..((((((((......)))))))).)))))(((((((....)))))))((((((((((..((-(......)))...))))))).))))))))).. ( -41.30) >DroPer_CAF1 10514 107 - 1 GCUACUGCUGCUCCCUGCGAAGGGGUUAAAAAAUUUGUUUUGAUUUUUUUCCUCUAGAAAUUUUUUU------ACGUUUU-----CGCUGUUUUGGAGCUUCAAAAGGGGA--GCAGGAG ....((.((((((((((((((((.((.(((((((((.(...((......))....).))))))))).------)).))))-----)))..((((((....)))))))))))--)))).)) ( -37.80) >DroEre_CAF1 10476 110 - 1 GCUA--GCUG--CCCGGCGAAGGGGUUAAAAAAUUUGUUUUGAUUUUUUUCCUUUAGAAACUCUUUGGUUC-UAUGCUUUGCGUUC--UUUUUUUAAGCUUCAGAGCGAGAC---AGCAG ....--((((--(.(.(((((((((..((((((((......)))))))).))).(((((.(.....).)))-))..))))))((((--(.............)))))).).)---))).. ( -24.82) >DroYak_CAF1 14378 110 - 1 ---A--GCUG--CCCGGCGAAGGGGUUAAAAAAUUUGUUUUGAUUUUUUUCCUUUAGAAACUCUUUGGUUUUUGUGUUUUUUUUUUUUUGUUUUUAAGCUUUAGAGCGAGAC---AGCAG ---.--((((--...((.(((((((((((((......)))))))))))))))..((((((((....))))))))...........(((((((((........))))))))))---))).. ( -22.20) >consensus ___A__GCUG__CCCGGCGAAGGGGUUAAAAAAUUUGUUUUGAUUUUUUUCCUCUAGAAACUCUUUGGUUUUUGUCCGCUCUGUUCU_UUUUUUUAAGCUUCAGAGCGAGAC_GCAGCAG ......((((...(((....(((((..((((((((......)))))))).))))).....((((..(((((........................)))))..)))))).)....)))).. (-14.35 = -14.79 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:05 2006