a score=0
s 3R_DroMel_CAF1 24916017 110 + 27905053 -----UAGCCGCACAAGCA----GCCGGCAAACCGCUUAUAAGCUGCGGUUUGACUUUGCUUUGACGAGUCGGGCAGGUCCUGACAUCAGAGCUGUGGCU-UUAACCACAGCAAACGCCC
s DroSec_CAF1 29197 115 + 1 AGCCAUAGCCGCACAAGCA----GCCGGCAAACCGCUUAUAAGCUGCGGUUUGACUUUGCUUUGACGAGUCGGGCAGGUCCUGACAUCAGAGCUGUGGCU-UUAACCACAGCAAAAGCCC
s DroEre_CAF1 27868 114 + 1 -----UAGCCGCACAAGUACAAACCCAACAUACCGCUUAUAAGCUGCGGUUUGACUUUGCUUUGACGAGUCGGGCAGGUCCUGACAUCAGAGCUGUGGCU-UUAACCACAGCAAACGCCC
s DroYak_CAF1 28232 115 + 1 -----UAGCCGCACAAGCACAAACCCAACAUACCGCUUAUAAGCUGCGGUUUGACUUUGCUUUGACGAGUCGGGCAGGUCCUGACAUCAGAGCUGUGGCUCUUAACCACAGCAAACGCCC