| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,902,472 – 24,902,567 |
| Length | 95 |
| Max. P | 0.989558 |
| Location | 24,902,472 – 24,902,567 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 94.74 |
| Mean single sequence MFE | -13.02 |
| Consensus MFE | -12.59 |
| Energy contribution | -12.59 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.799697 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24902472 95 + 27905053 UUAUUCGUUUCCCAUUUGCUGUUUUUCUUAUUUUCUGCUGACUGUUAAUAGGCCAACUACAACAUUUUUCGCGGCUGUCAGCAUUUCUCACUUCU ...................................(((((((........((((..................)))))))))))............ ( -12.47) >DroSec_CAF1 15515 95 + 1 UUGUUCGUUUCCCAUUUGCUGUUUUUCUUAUUUUCUGCUGACUGUUAAUAGGCCAACUACAACAUUUUUCGCGGCUGUCAGCAUUUCUCACUUCU ...................................(((((((........((((..................)))))))))))............ ( -12.47) >DroSim_CAF1 14853 95 + 1 UUGAUCGUUUCCCAUUUGCUGUUUUUCUUAUUUUCUGCUGACUGUUAAUAGGCCAACUACAACAUUUUUCGCGGCUGUCAGCAUUUCUCACUUCU ...................................(((((((........((((..................)))))))))))............ ( -12.47) >DroEre_CAF1 15571 95 + 1 UUUUUCGCUUCCCAUUUGCUGUUUUUCUCAUAUUCUGCUGACUUUUAAUAGGCCAACUACAACAUUUUUCGUGGCUGUCAGCAUUUCUCACUUCU ......((.........))................(((((((........(((((................))))))))))))............ ( -13.99) >DroYak_CAF1 15727 95 + 1 UUUUUUGCUUCCCAUUUGCUGUAUUUCUCAUAUUCUGCUGACUUUUAAUAGGCCAACUACAACAUUUUUCGUGGCUGUCAGCAUUUCUCACUUCU ......((.........))................(((((((........(((((................))))))))))))............ ( -13.69) >consensus UUGUUCGUUUCCCAUUUGCUGUUUUUCUUAUUUUCUGCUGACUGUUAAUAGGCCAACUACAACAUUUUUCGCGGCUGUCAGCAUUUCUCACUUCU ...................................(((((((........((((..................)))))))))))............ (-12.59 = -12.59 + -0.00)
| Location | 24,902,472 – 24,902,567 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 94.74 |
| Mean single sequence MFE | -16.40 |
| Consensus MFE | -15.80 |
| Energy contribution | -15.80 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.96 |
| SVM decision value | 2.17 |
| SVM RNA-class probability | 0.989558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24902472 95 - 27905053 AGAAGUGAGAAAUGCUGACAGCCGCGAAAAAUGUUGUAGUUGGCCUAUUAACAGUCAGCAGAAAAUAAGAAAAACAGCAAAUGGGAAACGAAUAA ............((((((((((..........))))).((((((.........))))))...............)))))....(....)...... ( -16.80) >DroSec_CAF1 15515 95 - 1 AGAAGUGAGAAAUGCUGACAGCCGCGAAAAAUGUUGUAGUUGGCCUAUUAACAGUCAGCAGAAAAUAAGAAAAACAGCAAAUGGGAAACGAACAA ............((((((((((..........))))).((((((.........))))))...............)))))....(....)...... ( -16.80) >DroSim_CAF1 14853 95 - 1 AGAAGUGAGAAAUGCUGACAGCCGCGAAAAAUGUUGUAGUUGGCCUAUUAACAGUCAGCAGAAAAUAAGAAAAACAGCAAAUGGGAAACGAUCAA .....(((....((((((((((..........))))).((((((.........))))))...............)))))....(....)..))). ( -17.80) >DroEre_CAF1 15571 95 - 1 AGAAGUGAGAAAUGCUGACAGCCACGAAAAAUGUUGUAGUUGGCCUAUUAAAAGUCAGCAGAAUAUGAGAAAAACAGCAAAUGGGAAGCGAAAAA ............((((((((((..........))))).((((((.........))))))...............)))))................ ( -15.30) >DroYak_CAF1 15727 95 - 1 AGAAGUGAGAAAUGCUGACAGCCACGAAAAAUGUUGUAGUUGGCCUAUUAAAAGUCAGCAGAAUAUGAGAAAUACAGCAAAUGGGAAGCAAAAAA ............((((((((((..........))))).((((((.........))))))...............)))))................ ( -15.30) >consensus AGAAGUGAGAAAUGCUGACAGCCGCGAAAAAUGUUGUAGUUGGCCUAUUAACAGUCAGCAGAAAAUAAGAAAAACAGCAAAUGGGAAACGAAAAA ............((((((((((..........))))).((((((.........))))))...............)))))....(....)...... (-15.80 = -15.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:33:07 2006