Locus 9373

Sequence ID 3R_DroMel_CAF1
Location 24,899,169 – 24,899,285
Length 116
Max. P 0.505087
window15001

overview

Window 1

Location 24,899,169 – 24,899,285
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 83.76
Mean single sequence MFE -17.07
Consensus MFE -12.39
Energy contribution -12.55
Covariance contribution 0.16
Combinations/Pair 1.16
Mean z-score -1.53
Structure conservation index 0.73
SVM decision value -0.06
SVM RNA-class probability 0.505087
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24899169 116 - 27905053
AUUCCCCAACUAUAACUUUUUCGCACUGCAUCAGCAGCUCUCUUACCCACUCGAAUCAUGCUAUACAACUCGAUGGUUCUACUGGCCAUCCA----UCCAUCUUCAAUUUUGGCAAGUGA
....................((((.((((....)))).....................(((((........(((((......(((....)))----.)))))........))))).)))) ( -18.39)
>DroSec_CAF1 12172 116 - 1
AUUCCCCAACUAUAACUUUUCCGCACUGCAUCAGCAGCUCUCUUACCCACCCGAAUCAUGCUAUAGAACUCGAUGGUUUUACUGGCCAUCCA----UCCAUCUUCAAUUUUGGCAAGUGA
.....................(((.((((....)))).....................(((((..(....)(((((((.....)))))))..----..............))))).))). ( -18.50)
>DroSim_CAF1 11627 120 - 1
AUUCCCCAACUAUAACUUUUCCGCACUGCAUCAGCAGCUCUCUUACCCACCCGAAUCAUACUAUACAACUCGAUGGUUUUACUGGCCAUCCAUCCAUCCAUCUUCAAUUUUGGCAAGUGA
..............((((..((...((((....))))..................................(((((((.....))))))).....................)).)))).. ( -15.70)
>DroEre_CAF1 12234 116 - 1
AUUCUCCAACUAUAACUUCUCCGCACUGCAUCAGCAGCUCUCUUGGCCAACCGAACCAUUCCAUACAACUCGAUGAUUGUACUAGCCAUCCA----UCCAUCUUCAAUUUUGGCAAGUGA
.....................(((.((((....))))........(((((..((.....))..........((((..((.......))..))----))...........)))))..))). ( -15.40)
>DroYak_CAF1 12359 93 - 1
AUUCCCAAACUAUAACUUUUCCG-----------------------CCAUCCGAACCAUUUCAUACAACUCGAUGGUUCCACUAGCCAUCCA----UCCAUCUUCAAUUUUGGCAAGUGA
.......................-----------------------......((((((((...........))))))))((((.((((....----..............)))).)))). ( -17.37)
>consensus
AUUCCCCAACUAUAACUUUUCCGCACUGCAUCAGCAGCUCUCUUACCCACCCGAAUCAUGCUAUACAACUCGAUGGUUCUACUGGCCAUCCA____UCCAUCUUCAAUUUUGGCAAGUGA
.........................((((....))))...............(((((((.............)))))))((((.((((......................)))).)))). (-12.39 = -12.55 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:58 2006