Locus 9371

Sequence ID 3R_DroMel_CAF1
Location 24,898,465 – 24,898,570
Length 105
Max. P 0.623921
window14997

overview

Window 7

Location 24,898,465 – 24,898,570
Length 105
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 87.19
Mean single sequence MFE -26.54
Consensus MFE -21.76
Energy contribution -22.84
Covariance contribution 1.08
Combinations/Pair 1.11
Mean z-score -1.51
Structure conservation index 0.82
SVM decision value 0.18
SVM RNA-class probability 0.623921
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24898465 105 + 27905053
UAACUUCUCCUAAUCCAAAGGCAGUUCAAUCAGGAACAAUGAACCAAACAAAGAGCCAACAACAAGGAGCGCGGAACUGGACGUGGAGUAGGAGCUUGAGUUGGA------------
((((((((((((.((((....((((((..(((.......)))..........(..((........))..)...))))))....)))).))))))...))))))..------------ ( -29.00)
>DroSec_CAF1 11456 117 + 1
UAACUCCGCCUAAUCCAAAGGCAGUUCAAUCAGGAACAAUGAACCAAACAAAGAGCCAACAACAAGGAGCGCGGAACUGGACGUGGAGUAGGAGUUAGAGUUGGAGUUGGAGCUGAA
((((((((((((.((((....((((((..(((.......)))..........(..((........))..)...))))))....)))).)))).........))))))))........ ( -28.70)
>DroSim_CAF1 10924 105 + 1
UAACUCCGCCUAAUCCAAAGGCAGUUCAAUCAGGAACAAUGAACCAAACAAAGAGCCAACAACAAGGAGCGCGGAACUGGACGUGGAGUAGGAGUUAGAGUUGGA------------
((((((..((((.((((....((((((..(((.......)))..........(..((........))..)...))))))....)))).)))).....))))))..------------ ( -26.70)
>DroEre_CAF1 11524 100 + 1
UAACUUCUCCUAAUCCAAAGGCAGUUCAAUCAGGAACAAUGAACCAAACAAAGAGCCAGCAAUAAGGAGCGCGGAGUUGGAUGUGGAGUAGGAGUUGGAG-----------------
...((.((((((.((((......((((......))))......((((.....(..((........))..)......))))...)))).))))))..))..----------------- ( -25.10)
>DroYak_CAF1 11659 100 + 1
UAACUUCUGCUAAUCCAAAGGCAGUUCAAUCAGGAACAAUGAACCAAACAAAGAGCCAGCAACAAGGAGCGCGGAGUUGAACGUGGAGUAGGAGUAGGAG-----------------
...((((((((..((((......(((((((..((.........))..........((.((........))..)).))))))).)))).....))))))))----------------- ( -23.20)
>consensus
UAACUUCUCCUAAUCCAAAGGCAGUUCAAUCAGGAACAAUGAACCAAACAAAGAGCCAACAACAAGGAGCGCGGAACUGGACGUGGAGUAGGAGUUAGAGUUGGA____________
((((((((((((.((((....((((((..(((.......)))..........(..((........))..)...))))))....)))).))))))...)))))).............. (-21.76 = -22.84 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:54 2006