Locus 937

Sequence ID 3R_DroMel_CAF1
Location 3,121,855 – 3,121,945
Length 90
Max. P 1.000000
window1492

overview

Window 2

Location 3,121,855 – 3,121,945
Length 90
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 70.57
Mean single sequence MFE -16.20
Consensus MFE -11.65
Energy contribution -11.77
Covariance contribution 0.12
Combinations/Pair 1.25
Mean z-score -3.80
Structure conservation index 0.72
SVM decision value 7.20
SVM RNA-class probability 1.000000
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3121855 90 + 27905053
-UAG-----UUAGCCAAAUAAUAUUGAGUUUCUUAGCUCACUUUUGCAUUUCAUGUAACUAACUCACUAACU-----AA-CUAUUAACAAACAUUUACAACA
-(((-----((((...........((((((....))))))...((((((...))))))........))))))-----).-...................... ( -13.20)
>DroSec_CAF1 9503 79 + 1
AUAGUUAAUUUAGCCAAAUAAUAGUGGGUUUCUUAGCUCACUAUUGCAUUUCAC-UAACUAACU----------------------AUUAACAUUUACAACA
(((((((..((((..(((((((((((((((....)))))))))))..))))..)-))).)))))----------------------)).............. ( -17.90)
>DroSim_CAF1 14764 98 + 1
UUAGUUAAUUUAUCCAAAUAAUAGUGGGCUUCUUAGCUCACUGUUGCAUUUCAUGUAACCAACUCAAAAUCAAAUUUAACCUAUU-ACAAACAUUUACA---
...(((((..............((((((((....))))))))(((((((...)))))))................))))).....-.............--- ( -17.50)
>consensus
_UAGUUAAUUUAGCCAAAUAAUAGUGGGUUUCUUAGCUCACUAUUGCAUUUCAUGUAACUAACUCA__A_C______AA_CUAUU_ACAAACAUUUACAACA
..................((((((((((((....))))))))))))........................................................ (-11.65 = -11.77 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:57 2006