Locus 9364

Sequence ID 3R_DroMel_CAF1
Location 24,893,032 – 24,893,145
Length 113
Max. P 0.980274
window14989

overview

Window 9

Location 24,893,032 – 24,893,145
Length 113
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 91.14
Mean single sequence MFE -30.61
Consensus MFE -23.19
Energy contribution -24.03
Covariance contribution 0.84
Combinations/Pair 1.11
Mean z-score -3.01
Structure conservation index 0.76
SVM decision value 1.86
SVM RNA-class probability 0.980274
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24893032 113 - 27905053
CUAAUCAAAUUUCCAUUCGCCAGCAUUGUUCUUGGCCCCGUUUGGC---ACUC---GUAAGUCAUUGCAAAAAAGCGAAAAAGCCAAGAGCAAUUAGGCGCAACAAAGCAACAAUUGCA
.................((((...((((((((((((..(((((.((---(..(---....)....)))....))))).....))))))))))))..)))).......(((.....))). ( -32.10)
>DroSec_CAF1 6041 116 - 1
CUAAUCAAAUUUCCAUUCGCCAGCAUUGUUCUUGGCCCCGUUCGCCACCACUC---GUAAGUCAUUGCACAAAAGCGAAAAAGCCAAGAGCAAUUAGGCGCAACAAAGCAACAAUUGCA
.................((((...((((((((((((....(((((........---((((....))))......)))))...))))))))))))..)))).......(((.....))). ( -32.94)
>DroSim_CAF1 5585 113 - 1
CUAAUCAAAUUUCCAUUCGCCAGCAUUGUUCUUGGCCCCGUUCGCC---ACUC---GUAAGUCAUUGCAGAAAAGCGAAAAAGCCAAGAGCAAUUAGGCGCAACAAAGCAACAAUUGCA
.................((((...((((((((((((....(((((.---..((---((((....)))).))...)))))...))))))))))))..)))).......(((.....))). ( -35.10)
>DroEre_CAF1 6059 111 - 1
CUAAUCAAAUUUCUAUUCCACAGCAUUGUUUUUGGCCCCGUUCGGC---ACUCGUCGU-----UUUGCACAAAAGCGAAAAAGUCAAGAGCAAUUAGGCGCAAGAAAGCAACAAUUGCA
...............(((....((((((((((((((......((((---....))))(-----(((((......))))))..))))))))))))...))....))).(((.....))). ( -24.50)
>DroYak_CAF1 6174 116 - 1
CUAAUCAAAUUUCCAUUCCCCAGCAUUGUUCUUGGCCCCGUUUGCC---ACUCGUCGUAAGUCAUUGCACAAAAGCGAAAAAGCCAAGAGCAAUUAGGCGCUACAAAGCAACAAUUGCA
......................((((((((((((((....(((((.---....((.((((....))))))....)))))...)))))))))))......(((....)))......))). ( -28.40)
>consensus
CUAAUCAAAUUUCCAUUCGCCAGCAUUGUUCUUGGCCCCGUUCGCC___ACUC___GUAAGUCAUUGCACAAAAGCGAAAAAGCCAAGAGCAAUUAGGCGCAACAAAGCAACAAUUGCA
.................((((...((((((((((((....(((((...........((((....))))......)))))...))))))))))))..)))).......(((.....))). (-23.19 = -24.03 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:47 2006