| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,874,644 – 24,874,805 |
| Length | 161 |
| Max. P | 0.953346 |
| Location | 24,874,644 – 24,874,752 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 86.91 |
| Mean single sequence MFE | -15.53 |
| Consensus MFE | -13.70 |
| Energy contribution | -13.87 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.950279 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24874644 108 + 27905053 AACUGUAACGGUAAAGUCGAAAGUCAACAGUUGAUAUGUUGUAAAAAAGCUAUUAAAUAAAAACAAAA-AACACAAAAAAAAAGAAAAGAU-UACCAAGGCAGGCAAGUG ..((((...(((((.(.(....).).....((((((.(((.......)))))))))............-.....................)-))))...))))....... ( -15.80) >DroSec_CAF1 7883 108 + 1 AACUGUAAUGGUAAAGUCGAAAGUCAACAGUUGAUAUGUUGUAAAAAAGCUAUUAAAUAAAACCAAAAAAACACAAA-AAAAUUAAAAGAU-UACCAAGGCAGGCAAGUG ..((((..((((((.(.(....).).....((((((.(((.......))))))))).....................-............)-)))))..))))....... ( -17.80) >DroSim_CAF1 7905 98 + 1 AACUGUAACGGUAAAGUCGAAAGUCAACAGUUGAUAUGUUGUAAAAAAGCUAUUAAAUA----------AACACAAA-AAAAUGGAAAGAU-UACCAAGGCAGGCAAGUG ..((((...(((((.(.(....).).....((((((.(((.......)))))))))...----------........-............)-))))...))))....... ( -15.80) >DroEre_CAF1 8034 105 + 1 AACUGUAACGGUAAAGUCGAAAGUCAACAGUUGAUAUGUUGUAAAAAAGCUAUUAAAUAAAAAGAA--AAACACAAA-A-AAAGAAAAGAU-UACCAAGGCAGGCAAGUG ..((((...(((((.(.(....).).....((((((.(((.......)))))))))..........--.........-.-..........)-))))...))))....... ( -15.80) >DroYak_CAF1 8304 105 + 1 AACUGUAACGGUAAAGUCGAAAGUCAACAGUUGAUAUGUUGUAAAAAAGCUAUUAAAUAAAAAGAA--AAACACAAA-A-AAAGAAAAGAU-UACCAAGGCAGGCAAGUG ..((((...(((((.(.(....).).....((((((.(((.......)))))))))..........--.........-.-..........)-))))...))))....... ( -15.80) >DroAna_CAF1 7457 94 + 1 AACUAUAAAGGUAAAGUCGAAAGUCAACAGUUGAUAUGUUGUAAAAAAGCUAUUAAAGAAAAAUAU----------G-G-UAUGGAAUGAUUUACCAAGG-AGGCAA--- .........((((((.(((.....(((((.......))))).......(((((...........))----------)-)-)......)))))))))....-......--- ( -12.20) >consensus AACUGUAACGGUAAAGUCGAAAGUCAACAGUUGAUAUGUUGUAAAAAAGCUAUUAAAUAAAAACAA___AACACAAA_A_AAAGAAAAGAU_UACCAAGGCAGGCAAGUG ..((((...((((..(.(....).).....((((((.(((.......)))))))))....................................))))...))))....... (-13.70 = -13.87 + 0.17)
| Location | 24,874,713 – 24,874,805 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 96.50 |
| Mean single sequence MFE | -11.10 |
| Consensus MFE | -10.70 |
| Energy contribution | -10.90 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.953346 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24874713 92 - 27905053 ACACAUCUGCUCGUACCAUUUACUUAGUAGCUUCUUUAACAUUCAAUUACUCUCACUUGCCUGCCUUGGUAAUCUUUUCUUUUUUUUUGUGU (((((.(((((.(((.....)))..)))))..........................(((((......)))))...............))))) ( -11.60) >DroSec_CAF1 7953 91 - 1 ACACAUCUGCUCGUACCAUUUACUUAGUAGCUUCUUUAACAUUCAAUUACGCUCACUUGCCUGCCUUGGUAAUCUUUUAAUUUU-UUUGUGU (((((.(((((.(((.....)))..)))))..........................(((((......)))))............-..))))) ( -11.60) >DroSim_CAF1 7965 91 - 1 ACACAUCUGCUCGUACCAUUUACUUAGUAGCUUCUUUAACAUUCAAUUACGCUCACUUGCCUGCCUUGGUAAUCUUUCCAUUUU-UUUGUGU (((((.(((((.(((.....)))..)))))..........................(((((......)))))............-..))))) ( -11.60) >DroEre_CAF1 8102 90 - 1 ACACAUCUUCUCGUACCAUUUACUUAGUAGCUUCUUUAACAUUCAAUUACGCUCACUUGCCUGCCUUGGUAAUCUUUUCUUU-U-UUUGUGU (((((.....................(((((...................))).))(((((......)))))..........-.-..))))) ( -9.11) >DroYak_CAF1 8372 90 - 1 ACACAUCUGCUCGUACCAUUUACUUAGUAGCUUCUUUAACAUUCAAUUACGCUCACUUGCCUGCCUUGGUAAUCUUUUCUUU-U-UUUGUGU (((((.(((((.(((.....)))..)))))..........................(((((......)))))..........-.-..))))) ( -11.60) >consensus ACACAUCUGCUCGUACCAUUUACUUAGUAGCUUCUUUAACAUUCAAUUACGCUCACUUGCCUGCCUUGGUAAUCUUUUCUUUUU_UUUGUGU (((((.(((((.(((.....)))..)))))..........................(((((......)))))...............))))) (-10.70 = -10.90 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:32:31 2006