Locus 934

Sequence ID 3R_DroMel_CAF1
Location 3,119,769 – 3,119,874
Length 105
Max. P 0.656837
window1486

overview

Window 6

Location 3,119,769 – 3,119,874
Length 105
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 81.74
Mean single sequence MFE -18.50
Consensus MFE -11.53
Energy contribution -11.34
Covariance contribution -0.19
Combinations/Pair 1.17
Mean z-score -1.88
Structure conservation index 0.62
SVM decision value 0.26
SVM RNA-class probability 0.656837
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3119769 105 - 27905053
GACAAUGCGCUCCGGUCCCAUACUCCCACGGAGUGUCACACUGGAAACAAAUUCAUUUCCCAAUUAAAAUUUU---------AUGCCAGGUCCUUAUAAACUAAUAAGCAAACA
(((...((((((((..............))))))))....((((....(((((..............))))).---------...)))))))(((((......)))))...... ( -20.18)
>DroSec_CAF1 7404 105 - 1
GACAAUGCACUCCGGUCCCAUACUCCCACGGAGUGUCACACUGAAAACAAAUGCAUAUCCCCAUUUAAAUUUA---------AUGCCAUGUCCUUAUACACUAAUAAACAAAUA
((((..((((((((..............))))))))..((.((((...(((((........)))))...))))---------.))...))))...................... ( -17.04)
>DroSim_CAF1 12676 105 - 1
GACAAUGCACUCCGGUCCCAUACUCCCACGGAGUGUCACACUGAAAACAAAUGCAUUACCCAAUUUAAAUUUA---------AUGCCAGGUCCUUAUACACUAAUAAACAAAUA
(((...((((((((..............))))))))....(((.........((((((.............))---------))))))))))...................... ( -18.26)
>DroYak_CAF1 10912 110 - 1
GACAGUCCGCUCCGUUCCCAUACUCCCACGGAGUAUCGCACAGAAAGGAAA----UUUCCCAUUUUGAAUUUAAUAACCUUCAUGCCAGGUCCUUACAAGCUGAUAUUCAAAUA
..((((..(((((((............)))))))......(((((.((...----....)).)))))....(((..((((.......))))..)))...))))........... ( -18.50)
>consensus
GACAAUGCACUCCGGUCCCAUACUCCCACGGAGUGUCACACUGAAAACAAAUGCAUUUCCCAAUUUAAAUUUA_________AUGCCAGGUCCUUAUAAACUAAUAAACAAAUA
(((....(((((((..............)))))))((.....)).............................................)))...................... (-11.53 = -11.34 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:52 2006