Locus 9332

Sequence ID 3R_DroMel_CAF1
Location 24,798,055 – 24,798,153
Length 98
Max. P 0.698433
window14933

overview

Window 3

Location 24,798,055 – 24,798,153
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 81.99
Mean single sequence MFE -18.75
Consensus MFE -12.16
Energy contribution -12.02
Covariance contribution -0.14
Combinations/Pair 1.06
Mean z-score -2.02
Structure conservation index 0.65
SVM decision value 0.35
SVM RNA-class probability 0.698433
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24798055 98 + 27905053
AAUAUCCGGUUUUCAACCGCAAACUGCACUUUUCUACCCAUUGUGCCUGGCUCCAUUCGUUAUCCUGCCACUGCUCCUGCUGAGUGGCCCCAUCCCAA
......((((.....))))......((((.............)))).(((..((((((((......))....((....)).))))))..)))...... ( -18.52)
>DroPse_CAF1 9091 76 + 1
AAUAUCCGGUUUUCAACCGCAUAUUGCACUUUUCUACCCAUUGUGC--AGCCCCAUUCGUUAUCC------------UGCUGAGUGGCU--------A
(((((.((((.....)))).)))))((((.............))))--....((((((((.....------------.)).))))))..--------. ( -17.72)
>DroSec_CAF1 14336 98 + 1
AAUAUCCGGUUUUCAACCGCAAACUGCACUUUUCUACCCAUUGUGCCUGGCUCCAUUCGUUAUCCUGCCACUGCUUCUGCUGAGUGGCCCCAUCCCAA
......((((.....))))......((((.............)))).(((..((((((((......))....((....)).))))))..)))...... ( -18.52)
>DroSim_CAF1 14696 98 + 1
AAUAUCCGGUUUUCAACCGCAAACUGCACUUUUCUACCCAUUGUGCCUGGCUCCAUUCGUUAUCCUGCCACUGCUCCUGCUGAGUGGCACCAUCCCAA
.......(((........((.....((((.............))))...))...............((((((((....))..)))))))))....... ( -19.72)
>DroAna_CAF1 7712 82 + 1
AAUAUCCGGUUUUCAACCGCAAACUGCACUUUUCUACCCAUUGUGC--AGUACCAUUCGUUAUCC------------UGCUGAGUGGCUU--ACACAA
......((((.....))))...(((((((.............))))--))).((((((((.....------------.)).))))))...--...... ( -20.32)
>DroPer_CAF1 9272 76 + 1
AAUAUCCGGUUUUCAACCGCAUAUUGCACUUUUCUACCCAUUGUGC--AGCCCCAUUCGUUAUCC------------UGCUGAGUGGCU--------A
(((((.((((.....)))).)))))((((.............))))--....((((((((.....------------.)).))))))..--------. ( -17.72)
>consensus
AAUAUCCGGUUUUCAACCGCAAACUGCACUUUUCUACCCAUUGUGC__AGCUCCAUUCGUUAUCC____________UGCUGAGUGGCUC__UCCCAA
.......(((.....)))((.....((((.............))))...)).((((((((..................)).))))))........... (-12.16 = -12.02 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:31:59 2006