| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,770,636 – 24,770,736 |
| Length | 100 |
| Max. P | 0.914960 |
| Location | 24,770,636 – 24,770,736 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 69.77 |
| Mean single sequence MFE | -26.40 |
| Consensus MFE | -13.99 |
| Energy contribution | -13.67 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.53 |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.914960 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24770636 100 + 27905053 AGAGUGGGUUUGCA-------UUAUGCCGCCAUGUCUGCCGGAUGUUCCAUAUAUGUGUGUGUGCACUUAUAGU-UGGUCACUUAUCACUGCUUUUGCAGGUAUCUGU .((((((((..((.-------....)).)))......(((((.....)).((((.((((....)))).))))..-.))))))))....((((....))))........ ( -24.50) >DroPse_CAF1 22750 95 + 1 AGACUACAUUCUAAGCUCUAUAUAUUUCGAUAUGUACGUU--------GAUGCGUGCAUGUGUGUACUUGUAGUUUGGUCACUUAUCGCUGCUUUUGCAG-----UGC .(((((.(((.((((...(((((((......((((((((.--------...))))))))))))))))))).))).)))))......((((((....))))-----)). ( -28.00) >DroPer_CAF1 23044 95 + 1 AGACUACAUUCUAAGCUCUAUAUAUUUCGAUAUGUAUGUU--------GAUGCGUGCAUGUGUGUACUUGUAGUUUGGUCACUUAUCGCUGCUUUUGCAG-----UGC ((((((((......((((.((((((........)))))).--------)).))(((((....))))).))))))))..........((((((....))))-----)). ( -26.70) >consensus AGACUACAUUCUAAGCUCUAUAUAUUUCGAUAUGUAUGUU________GAUGCGUGCAUGUGUGUACUUGUAGUUUGGUCACUUAUCGCUGCUUUUGCAG_____UGC .((..........................((((((((((............))))))))))(((.(((........))))))...)).((((....))))........ (-13.99 = -13.67 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:30:57 2006