Locus 927

Sequence ID 3R_DroMel_CAF1
Location 3,114,432 – 3,114,548
Length 116
Max. P 0.939279
window1466

overview

Window 6

Location 3,114,432 – 3,114,548
Length 116
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 89.44
Mean single sequence MFE -23.65
Consensus MFE -21.43
Energy contribution -21.18
Covariance contribution -0.25
Combinations/Pair 1.16
Mean z-score -1.79
Structure conservation index 0.91
SVM decision value 1.28
SVM RNA-class probability 0.939279
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3114432 116 - 27905053
GGUGGACUGUGUCUGUUAUUCCCCUCAUUUAAUUAACAAUAAAAAUAGGCUAAA-AAGUCUUAAAA---AAGCAAAAACUGCACGCGAAUUAUGCAGGCGCACACAAACAAGCCACACAC
.((((..(((((((((.((((.........................(((((...-.))))).....---..(((.....)))....))))...)))))))))..........)))).... ( -24.10)
>DroPse_CAF1 2007 115 - 1
GGCGGCUUGUGUCUGUUAUUCCCCUCAUUUAAUUAACAAUAAAAAUAGGCUAAAAAAGUCUAAAAAAUAAAGUAAAAACUGCCUGCGAAUUAUGCAUGCACACGCACA-----CGCACAC
.(((((.(((((.(((.((((........................((((((.....))))))........(((....)))......))))...))).))))).))...-----))).... ( -21.30)
>DroSim_CAF1 7463 116 - 1
GGUGGACUGUGUCUGUUAUUCCCCUCAUUUAAUUAACAAUAAAAAUAGGCUAAA-AAGUCUUAAAA---AAGCAAAAACUGCACGCGAAUUAUGCAGGCGCACACAAACAAGCCACGCAC
.((((..(((((((((.((((.........................(((((...-.))))).....---..(((.....)))....))))...)))))))))..........)))).... ( -24.10)
>DroPer_CAF1 2020 115 - 1
GGCGGCUUGUGUCUGUUAUUCCCCUCAUUUAAUUAACAAUAAAAAUAGGCUAAAAAAGUCUAAAAAAUAAAGUAAAAACUGCCUGCGAAUUAUGCAUGCACACGCACA-----CGCACAC
.(((((.(((((.(((.((((........................((((((.....))))))........(((....)))......))))...))).))))).))...-----))).... ( -21.30)
>DroEre_CAF1 2049 115 - 1
GGCGGACUGUGUCUGUUAUUCCCCUCAUUUAAUUAACAAUAAAAAUAGGCUAAA-AAGUCUUAAAA---AAGCAAAAACUGCACGCGAAUUAUGCAGGCGCACA-AAACACGCCGCGCAC
((((...(((((((((.((((.........................(((((...-.))))).....---..(((.....)))....))))...)))))))))..-.....))))...... ( -26.80)
>DroYak_CAF1 5637 116 - 1
GGUGGACUGUGUCUGUUAUUCCCCUCAUUUAAUUAACAAUAAAAAUAGGCUAAA-AAGUCUUAAAA---AAGCAAAAACUGCACGCGAAUUAUGCAGGCGCACACAAACACGCCGCGCAC
((((...(((((((((.((((.........................(((((...-.))))).....---..(((.....)))....))))...)))))))))........))))...... ( -24.30)
>consensus
GGCGGACUGUGUCUGUUAUUCCCCUCAUUUAAUUAACAAUAAAAAUAGGCUAAA_AAGUCUUAAAA___AAGCAAAAACUGCACGCGAAUUAUGCAGGCGCACACAAACA_GCCGCACAC
.((((..(((((((((.((((.........................(((((.....)))))..........(((.....)))....))))...)))))))))..........)))).... (-21.43 = -21.18 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:34 2006