| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,113,788 – 3,113,884 |
| Length | 96 |
| Max. P | 0.610671 |
| Location | 3,113,788 – 3,113,884 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.37 |
| Mean single sequence MFE | -22.09 |
| Consensus MFE | -15.57 |
| Energy contribution | -15.24 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.610671 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3113788 96 + 27905053 --GCAUUUUAAAAACAAUUUGGAGAGUGCCGUGCAAAAAA--------------------GUGCGGCCAUUAAAUGCAAAAAACAAGCAAAGCAAAACAAA--ACUCGAAUGCACUGGAC --((((((......(.....)..((((((((..(......--------------------)..)))).......(((.........)))............--))))))))))....... ( -20.40) >DroPse_CAF1 1353 119 + 1 UGGCGUUUUAAAAACAAUUUGCUGAGUGCUG-GCAAAAAAUGCGGUAUGUCUGUAUGUGUGUGUGGCCAUUAAAUGCAAAAAACAAGCAAAGCAAAACAAAGCACUCGAAUGCGUUGGAC ..((((((((((.....))))..((((((((-((.....((((((.....)))))).........)))......(((.........)))...........)))))))))))))....... ( -25.24) >DroSim_CAF1 6807 95 + 1 --GCAUUUUAAAAACAAUUUGGAGAGUGCCGUGCAAA-AA--------------------GUGCGGCCAUUAAAUGCAAAAAACAAGCAAAGCAAAACAGA--ACUCGAAUGCACUGGAC --((((((......(.....)..((((((((..(...-..--------------------)..)))).......(((.........)))............--))))))))))....... ( -20.20) >DroPer_CAF1 1381 119 + 1 UGGCGUUUUAAAAACAAUUUGCUGAGUGCUG-GCAAAAAAUGCGGUAUGUUUGUAUGUGUGUGUGGCCAUUAAAUGCAAAAAACAAGCAAAGCAAAACAAAGCACUCGAAUGCGUUGGAC ..((((((((((.....))))..(((((((.-(((.....)))(.(.(((((((.(...(((((.........)))))..).))))))).).).......)))))))))))))....... ( -26.10) >DroEre_CAF1 1453 95 + 1 --GCAUUUUAAAAACAAUUUGGAGAGUGCCGUGCAAA-AA--------------------GUGCGGCCAUUAAAUGCAAAAAACAAGCAAAGCAAAACAAA--ACUCGAAUGCACUGGAC --((((((......(.....)..((((((((..(...-..--------------------)..)))).......(((.........)))............--))))))))))....... ( -20.20) >DroYak_CAF1 5010 96 + 1 --GCAUUUUAAAAACAAUUUGGAGAGUGCCGUGCAAAAAA--------------------GUGCGGCCAUUAAAUGCAAAAAACAAGCAAAGCAAAACAAA--ACUCGAAUGCACUGAAC --((((((......(.....)..((((((((..(......--------------------)..)))).......(((.........)))............--))))))))))....... ( -20.40) >consensus __GCAUUUUAAAAACAAUUUGGAGAGUGCCGUGCAAAAAA____________________GUGCGGCCAUUAAAUGCAAAAAACAAGCAAAGCAAAACAAA__ACUCGAAUGCACUGGAC ..((((((((((.....))))..(((((((((((..........................))))))).......(((.........)))..............))))))))))....... (-15.57 = -15.24 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:33 2006