Locus 925

Sequence ID 3R_DroMel_CAF1
Location 3,112,219 – 3,112,317
Length 98
Max. P 0.602833
window1464

overview

Window 4

Location 3,112,219 – 3,112,317
Length 98
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 87.01
Mean single sequence MFE -36.60
Consensus MFE -30.22
Energy contribution -29.90
Covariance contribution -0.32
Combinations/Pair 1.20
Mean z-score -1.80
Structure conservation index 0.83
SVM decision value 0.14
SVM RNA-class probability 0.602833
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3112219 98 - 27905053
CCCGACACCUCAGGCUGGCCAUGGCGAAGCGGAUCCUGGAAGAAGACCAGGGACACGC-------GGUUAGGGAGGUAAAUGCUGGUCAGAGAGGGUUGGGAUGU
((((((.((((...((((((.((((...((((.((((((.......)))))).).)))-------.))))....(((....))))))))).)))))))))).... ( -41.60)
>DroSim_CAF1 5233 98 - 1
CCCGACACCGCAGGCUGGCCAUGGCGAAGCGGAUCCUGGAAGAAGACCAGGGACACGC-------GGUUAGGGAGGGAAAUGCUGGUCAGAGAGGGUUGGGAUGU
((((((.((.....((((((.((((...((((.((((((.......)))))).).)))-------.))))((.(......).))))))))...)))))))).... ( -36.90)
>DroYak_CAF1 3404 105 - 1
CCCGACACCGCAGGCUGGCCAUGGCGAAGCGGAUUCUGGAAGAAGACCAGGAACACGCUUGGGGAGAUUAGCAAGGGAAAUGUUGGCUUGAGAGGGUAUGGAUGU
.(((((.((.(((((..((.....(.((((((.((((((.......)))))).).))))).)...(.....).........))..)))))...)))).))).... ( -31.30)
>consensus
CCCGACACCGCAGGCUGGCCAUGGCGAAGCGGAUCCUGGAAGAAGACCAGGGACACGC_______GGUUAGGGAGGGAAAUGCUGGUCAGAGAGGGUUGGGAUGU
((((((.((.....(((((((..((...((((.((((((.......)))))).).)))........(((.........))))))))))))...)))))))).... (-30.22 = -29.90 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:32 2006