| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,661,938 – 24,662,043 |
| Length | 105 |
| Max. P | 0.679029 |
| Location | 24,661,938 – 24,662,043 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 82.37 |
| Mean single sequence MFE | -33.58 |
| Consensus MFE | -23.55 |
| Energy contribution | -23.92 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.679029 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24661938 105 - 27905053 UCCUACAGUUCCGUGGACUCUAGCGAUUCUAACGACAACCAGUCAAAGUCGCUCUUCGAGCUGUGCAUCCUCAAGGGCAUGUACAAGACGAAGGAACCCGGCGCC .......((.(((.((......((((((.....(((.....)))..))))))((((((...(((((((((.....)).)))))))...))))))..))))).)). ( -31.70) >DroVir_CAF1 6953 102 - 1 UCCUACAGCUCGGUGGAUUCCAGCGACUCGAAUGACAAUCAAUCGAAGUCGCUGUUCGAGCUGUGCAUACUGAAUGGCAUGUACAAGUCCAAAGAGCCGGGC--- .(((...((((..((((((.(((((((((((.((.....)).))).)))))))).......(((((((.((....)).)))))))))))))..)))).))).--- ( -41.10) >DroWil_CAF1 2941 103 - 1 UCCUACAGCUCUGUGGACUCCAGUGACUCAAACGAUAAUCAGUCAAAGUCUCUCUUUGAACUGUGCAUUCUCAAGGGCAUGUACAAGACUAAGGAGCCAGCAG-- ..........((((((.((((..(((((............))))).((((((.....))..(((((((.((....)).))))))).))))..))))))).)))-- ( -27.20) >DroMoj_CAF1 3200 102 - 1 UCCUACAGCUCGGUGGACUCCAGCGACUCGAAUGACAAUCAGUCCAAGUCGCUCUUCGAGCUGUGCAUUUUGAAUGGCAUGUACAAAUCCAAGGAGCCGAGC--- .......((((((....(((((((((((.((.((.....)).))..)))))))....((..(((((((.((....)).)))))))..))...))))))))))--- ( -33.10) >DroAna_CAF1 5284 105 - 1 UCCUACAGUUCGGUGGAUUCCAGCGACUCCAACGACAACCAGUCUAAGUCGCUCUUCGAGCUUUGCAUUCUGAAGGGGAUGUACAAGUCCAAGGAGCCGGGCAUC .......(((((((....((((((((((.....(((.....)))..)))))))....(..(((((((((((....)))))))).)))..)..))))))))))... ( -34.00) >DroPer_CAF1 6174 99 - 1 UCGUACAGCUCGGUGGACUCCAGCGACUCGAACGACAAUCAGUCCAAGUCGCUGUUUGAGCUGUGCAUCCUCAAGGGCAUGUACAAGUCGAAGCAGUCC------ ..(((((((((((......))(((((((.(.((........)).).)))))))....)))))))))........((((.(((..........)))))))------ ( -34.40) >consensus UCCUACAGCUCGGUGGACUCCAGCGACUCGAACGACAAUCAGUCAAAGUCGCUCUUCGAGCUGUGCAUUCUCAAGGGCAUGUACAAGUCCAAGGAGCCGGGC___ .......((((..((((((..(((((((.....(((.....)))..)))))))........(((((((.((....)).)))))))))))))..))))........ (-23.55 = -23.92 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:44 2006