Locus 9242

Sequence ID 3R_DroMel_CAF1
Location 24,651,838 – 24,651,930
Length 92
Max. P 0.607862
window14774

overview

Window 4

Location 24,651,838 – 24,651,930
Length 92
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 81.81
Mean single sequence MFE -30.98
Consensus MFE -22.84
Energy contribution -22.78
Covariance contribution -0.05
Combinations/Pair 1.21
Mean z-score -1.42
Structure conservation index 0.74
SVM decision value 0.15
SVM RNA-class probability 0.607862
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24651838 92 + 27905053
CUGCGGGCGGUGGUUGUCUUGCCGGCGGCAGCGGAGGAGCAGUUCUUUGGUUGCCAUUCUG----------AAUUGAGAGAUUCGAUUUUGGUUA--AGGAAAG
..((.(((((........))))).))((((((.((((((...)))))).)))))).((((.----------(((..(((.......)))..))).--))))... ( -31.60)
>DroSec_CAF1 10979 92 + 1
CUGCGGGCGGUGGUUGUCUUGCCGGCGGCAGCGGAGGAGCAGUUCUUUGGUUGCCAUUCUG----------AAUUGAGAGAAUGGAUUUAGUUUA--AGGAAAG
..((.(((((........))))).))((((((.((((((...)))))).))))))...(((----------((((.(.....).)))))))....--....... ( -29.80)
>DroSim_CAF1 11191 92 + 1
CUGCGGGCGGUGGUUGUCUUGCCGGUGGCAGCGGAGGAGCAGUUCUUUGGUUGCCAUUCUG----------AAUUGAGAGAUUGGAUUUAGUUUA--AGGAAAG
..((.(((((........))))).))((((((.((((((...)))))).)))))).(((((----------(((((((........)))))))).--))))... ( -27.00)
>DroEre_CAF1 11104 92 + 1
CUGCGGGCGGUGGUUGUCUUGCCGGCGGCAGCGGAGGAGCAGUUCUUUGGUUGCCAUUCUG----------AAUUGAGAGAUUAGAUAUGUGGUA--AAACAUG
..((.(((((........))))).))((((((.((((((...)))))).))))))..((((----------(.((....)))))))(((((....--..))))) ( -31.10)
>DroYak_CAF1 11368 92 + 1
CUGCAGGCGGUGGUUGUCUUGCCGGCGGCAGCGGAGGAGCAGUUCUUUGGUUGCCAUUCUG----------AAUUGAGAGAUUGCAUGUAGGGUU--AGAGAAG
(((((.(((.((((......)))).)((((((.((((((...)))))).))))))......----------((((....)))))).)))))....--....... ( -30.90)
>DroAna_CAF1 11323 104 + 1
CAGGAGGCGGUGGCUGCCUCGCCGGCGGUGGCGGUGGCGCAGUUCUUUGGUUGCCAUUCUGCGACUGCUGCAAUGAAACGAAUCAAUUAGUUGCAAUAGUAUAG
...(((((((...)))))))...((((((.((((((((((((....)))..)))))..)))).))))))(((((...............))))).......... ( -35.46)
>consensus
CUGCGGGCGGUGGUUGUCUUGCCGGCGGCAGCGGAGGAGCAGUUCUUUGGUUGCCAUUCUG__________AAUUGAGAGAUUGGAUUUAGGGUA__AGGAAAG
..((.(((((........))))).))((((((.((((((...)))))).))))))................................................. (-22.84 = -22.78 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:29:39 2006