Locus 924

Sequence ID 3R_DroMel_CAF1
Location 3,111,155 – 3,111,275
Length 120
Max. P 0.812309
window1463

overview

Window 3

Location 3,111,155 – 3,111,275
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -27.50
Consensus MFE -26.33
Energy contribution -26.67
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.92
Structure conservation index 0.96
SVM decision value 0.65
SVM RNA-class probability 0.812309
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3111155 120 - 27905053
CUAAAAAAACAAUUUGCUAAAGUAUCUAUGAAUUCUAAGCGCCCAGAAAAUGGCUCAAUGGCGCCGCUAAAUGGAUGAAAAAUUCAUGGAAAACCGUUUUGCGGCCACCAGACAUAGAAU
........................((((((........(.(((........))).)..(((.(((((.((((((((((.....))))......)))))).)))))..)))..)))))).. ( -28.90)
>DroSim_CAF1 4087 120 - 1
CUGAAAAAACAAUUUGCUAAAGUAUCUAUGAAUUCUAAGCGCCCAGAAAAUGGCUCAAUGGCGCCGCUAAAUGGAUGAAAAAUUCAUGGAAAACCGUUUUGCGGCCACCAGACAUAGAAU
........................((((((........(.(((........))).)..(((.(((((.((((((((((.....))))......)))))).)))))..)))..)))))).. ( -28.90)
>DroYak_CAF1 1806 120 - 1
CUGAAAAAACAAUUUGCUAAAGUAUCUAUGAAUUCUAAGCGCCCAGAAAAUGGCUCAAUGGCGACGCUAAAUGGAUGAAAAAUUCAUGGAAAACCGUUUUGCGGCCACCAGACAUAGAAA
........................((((((........(.(((........))).)..((((..(((.((((((((((.....))))......)))))).))))))).....)))))).. ( -24.70)
>consensus
CUGAAAAAACAAUUUGCUAAAGUAUCUAUGAAUUCUAAGCGCCCAGAAAAUGGCUCAAUGGCGCCGCUAAAUGGAUGAAAAAUUCAUGGAAAACCGUUUUGCGGCCACCAGACAUAGAAU
........................((((((........(.(((........))).)..(((.(((((.((((((((((.....))))......)))))).)))))..)))..)))))).. (-26.33 = -26.67 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:31 2006