| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,110,705 – 3,110,811 |
| Length | 106 |
| Max. P | 0.777825 |
| Location | 3,110,705 – 3,110,811 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.36 |
| Mean single sequence MFE | -41.03 |
| Consensus MFE | -25.07 |
| Energy contribution | -25.30 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.777825 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3110705 106 - 27905053 GGCGUCAGCUGCAUUGACGCCGGUGUGCCU--AUGUGUGCGUGAGCAUUUGAGGGUGUGGGUUUAGGUGUGUGUGAGCUUUGGGCUGAAAUACUAAGGAUGGUUGC------------CA ((((((((.....))))))))((((..(((--....((((....))))....)))..).......(((((...(.(((.....))).).)))))..........))------------). ( -36.40) >DroSim_CAF1 3645 102 - 1 GGCGUCAGCUGCAUUGACGCCGGUGUGCCU--AUGUGUGCGUGAGCAUUUGAGGGUGUGGGUG----UGGGUGUGAGCUUUGGGCUGAAGUACUGAGCAUGGUUGC------------CA ((((.((((((((((.(((((.(..(.(((--....((((....))))...))))..).))))----).))))).))))....(((.(.....).)))...).)))------------). ( -39.70) >DroYak_CAF1 1370 107 - 1 GGCGUCAGCUGCAU-GACGCCGGUGUGUGUGCCUGUGUGCGUGAGCAUUUGAGGGUGCGGG------------UGAGCUUUGGGCUGAGAUCCUGAGGAUGGUUGCCACCGCCACUGCCA (((((((......)-))))))(((...((..(((..((((....))))....)))..))((------------((.((....(((.(..((((...))))..).)))...))))))))). ( -47.00) >consensus GGCGUCAGCUGCAUUGACGCCGGUGUGCCU__AUGUGUGCGUGAGCAUUUGAGGGUGUGGGU_____UG_GUGUGAGCUUUGGGCUGAAAUACUGAGGAUGGUUGC____________CA ((((((((.....))))))))...(..(((......((((....))))....)))..)...............(.(((.....))).)................................ (-25.07 = -25.30 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:30 2006