| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,110,476 – 3,110,591 |
| Length | 115 |
| Max. P | 0.516615 |
| Location | 3,110,476 – 3,110,591 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.70 |
| Mean single sequence MFE | -25.00 |
| Consensus MFE | -23.92 |
| Energy contribution | -23.70 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.96 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516615 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3110476 115 - 27905053 GCACUUGUGUGGGCUUCUAUCUGUGUCCGACUGUUUUGUUUGUAUUCAAAGUCCACAAAUACGAGUCACGCA----UCGCAAUAAGCCCAUGCAAUCCCCUGCCUCACUCCUCACUCC-A (((.((((((((((((.....(((((..((((....(((((((...........)))))))..)))))))))----.......)))))))))))).....)))...............-. ( -26.90) >DroSim_CAF1 3415 116 - 1 GCACUUGUGUGGGUUUCUAUCUGUGUCCGACUGUUUUGUUUGUAUUCAAAGUCCACAAAUACGAGUCACGCA----UCGCAAUAAGCCCAUGCAAUCCCCUGCCUCACUUCUCACUCCCU (((.((((((((((((.....(((((..((((....(((((((...........)))))))..)))))))))----.......)))))))))))).....)))................. ( -24.50) >DroYak_CAF1 1139 111 - 1 GCACUUGUGUGGGUUUCUAUCUGUGUCCGACUGUUUUGUUUGUAUUCAAAGUCCACAAAUACGAGUCACGCAUCCAUCGCAAUAAGCCCAUGCAAUCCCCUGCCCCACUCC--------- (((.((((((((((((.....((((...((.(((..((((((((((...........)))))))).)).)))))...))))..)))))))))))).....)))........--------- ( -23.60) >consensus GCACUUGUGUGGGUUUCUAUCUGUGUCCGACUGUUUUGUUUGUAUUCAAAGUCCACAAAUACGAGUCACGCA____UCGCAAUAAGCCCAUGCAAUCCCCUGCCUCACUCCUCACUCC__ (((.((((((((((((............((((....(((((((...........)))))))..))))..((.......))...)))))))))))).....)))................. (-23.92 = -23.70 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:29 2006