Locus 9182

Sequence ID 3R_DroMel_CAF1
Location 24,494,587 – 24,494,686
Length 99
Max. P 0.753710
window14686

overview

Window 6

Location 24,494,587 – 24,494,686
Length 99
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 94.61
Mean single sequence MFE -20.87
Consensus MFE -17.12
Energy contribution -17.57
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -2.60
Structure conservation index 0.82
SVM decision value 0.48
SVM RNA-class probability 0.753710
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24494587 99 + 27905053
AAUGCAUACUCUAAUUAUUAUCAAUGCGAGCCUAAUCAGCCAUUUAAAAAUCAACUUGAAUCAUUGAUAUCUUUGGUAUGUACCCCAAAAGUAUGCAGA
..((((((((........((((((((.((......))....((((((........))))))))))))))..(((((........))))))))))))).. ( -20.50)
>DroSec_CAF1 37524 99 + 1
AAUGCAUACUCUAACUAUUAUCACAGCGAGCCUAAUCAGGCGUUUAAAAAUCAACUUGAAUCAUUGAUAUCUUUGGUAUGUACCCAAAAAGUAUGCAGA
..((((((((........(((((......((((....))))((((((........))))))...)))))..(((((.......))))).)))))))).. ( -21.40)
>DroSim_CAF1 49378 99 + 1
AAUGCAUACUCUAACUAUUAUCAAAGCGAGCCAAAUCAGGCGUUUAAAAAUCAACUUGAAUCAUUGAUAUCUAUGGUAUGUACCCCAAAAGUAUGCAGA
..((((((((........((((((.....(((......)))((((((........))))))..))))))....(((........)))..)))))))).. ( -20.70)
>consensus
AAUGCAUACUCUAACUAUUAUCAAAGCGAGCCUAAUCAGGCGUUUAAAAAUCAACUUGAAUCAUUGAUAUCUUUGGUAUGUACCCCAAAAGUAUGCAGA
..((((((((........((((((.....(((......)))((((((........))))))..)))))).....(((....))).....)))))))).. (-17.12 = -17.57 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:21 2006