Locus 9176

Sequence ID 3R_DroMel_CAF1
Location 24,482,202 – 24,482,305
Length 103
Max. P 0.892667
window14679

overview

Window 9

Location 24,482,202 – 24,482,305
Length 103
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 78.15
Mean single sequence MFE -27.66
Consensus MFE -9.36
Energy contribution -11.12
Covariance contribution 1.76
Combinations/Pair 1.21
Mean z-score -2.25
Structure conservation index 0.34
SVM decision value 0.97
SVM RNA-class probability 0.892667
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24482202 103 - 27905053
GAAGGGUAGUAUGUACUUCAUAUGCGUUUUGGUAAGUCCACUGCAGUUCGUCAUAAUGGUAUAUACCCCUA-UAGAAAAGUAU-AGAUUUUUCUAUUA----C-------CUUAUU
..(((((((((((((((...((((((..(((...((....)).)))..)).))))..)))))))))....(-(((((((((..-..))))))))))))----)-------)))... ( -28.20)
>DroSec_CAF1 25316 103 - 1
GAGGGGUAGUAUGUACUUCAUAUGCGUUUUGGUGAGUCCACUGCAGUUCGUCAUAAUGGUAUAUACCCCAA-UAGAAAAGUAU-AGAUUUUUCUAUUA----C-------CUUAUU
((((((..(((((((((...((((((..((((((....)))..)))..)).))))..))))))))).))((-(((((((((..-..))))))))))).----)-------)))... ( -30.80)
>DroSim_CAF1 37139 103 - 1
GAGGGGUAGUAUGUACUUCAUAUGCGUUAUGGUGAGUCCACUGAAGUUCGUCAUAAUGGUAUAUAUCCCUA-UACGAAAGUAU-GGAUUUUUCUAUUA----C-------CUUAUU
..(((((((((........((((((((((((..((.((....))...))..)))))).))))))....(((-(((....))))-)).......)))))----)-------)))... ( -28.80)
>DroEre_CAF1 30089 111 - 1
GAGGGGUAGUAUGGACUUCAUAUGCGGUUGGCUAAGUCCACUGCAGUUCGACCCAAUAAUACAAAGGUAUAGUACAUAAGUAU-AGGCUUUUCUAGUA----CAUACAAUCUUUUU
(((((((.(((((.(((.....((((((.(((...))).)))))).................((((((...((((....))))-..))))))..))).----))))).))))))). ( -25.10)
>DroYak_CAF1 35523 115 - 1
GAGGGGUAGAAUGGACUUCAGAUGCGUUUGGCCAAGUCCACUGCAGUUAGACAAAAUAAAAAAUACCCCUA-UAGAAAAGUAUUCGGUUUUUCUAGUAGAGACAUACAAACUAUAU
.(((((((...(((((((((((....)))))...))))))(((....))).............))))))).-((((((((.......))))))))(((......)))......... ( -25.40)
>consensus
GAGGGGUAGUAUGUACUUCAUAUGCGUUUUGGUAAGUCCACUGCAGUUCGUCAUAAUGGUAUAUACCCCUA_UAGAAAAGUAU_AGAUUUUUCUAUUA____C_______CUUAUU
.(((((((((((((.....)))))).........((....)).....................)))))))..(((((((((.....)))))))))..................... ( -9.36 = -11.12 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:28:15 2006