| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,107,073 – 3,107,164 |
| Length | 91 |
| Max. P | 0.575194 |
| Location | 3,107,073 – 3,107,164 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 74.61 |
| Mean single sequence MFE | -27.66 |
| Consensus MFE | -15.54 |
| Energy contribution | -18.30 |
| Covariance contribution | 2.76 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575194 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3107073 91 + 27905053 ----CACUCCCUCUAGGAGACCAGAACACGCUCAGAAGCAAAACAA-AGCCAGCUGUGGCUGCUUGGCUGGCUUUCUUCUUGGUUUUUCUGCACGU ----..((((.....))))..(((((...(((.(((((......((-(((((((((........)))))))))))))))).)))..)))))..... ( -30.30) >DroSec_CAF1 33670 94 + 1 -UCACACUCACUCCAGGACACCAGGACUCGCUCAGAAGCAAAACAA-AGCCAGCUGUGGCUGCUUGGCUGGCUUUCUUCUGGGUUUUUCUGCACGU -....................(((((...(((((((((......((-(((((((((........))))))))))))))))))))..)))))..... ( -30.30) >DroEre_CAF1 33469 95 + 1 CACACACUCACUCCAGGACACCAGGACACGCUCAGAAGCAAAACAA-AGCCAGCUGUGGCUGCUUGGCUGGCUUUCUUCAGGGUUUCUCUGCACGU ...........(((.((...)).)))...((..((((((.....((-(((((((((........))))))))))).......))))))..)).... ( -27.20) >DroWil_CAF1 47494 80 + 1 CACAUACACAGCGGAAGAGACAAG-UGUGGCAGGCAAGCAAAACAAAAGCCAGCUG------CUU----UUCUUUC---UUAACG--UCUGCACGU ..........(((((.((((.(((-.(..((.(((.............))).))..------)..----..)))))---))....--))))).... ( -19.72) >DroYak_CAF1 32062 91 + 1 CCAAG----ACACCAGGACCCCAGGACACGCUCAGAAGGAAAACAA-AGCCAGCUGUGGCUGCUUGGCUGGCUUUCUUCUGGGUUUUUCUGCACGU .....----............(((((...(((((((((((......-(((((((((........))))))))))))))))))))..)))))..... ( -30.80) >consensus CACACACUCACUCCAGGACACCAGGACACGCUCAGAAGCAAAACAA_AGCCAGCUGUGGCUGCUUGGCUGGCUUUCUUCUGGGUUUUUCUGCACGU .....................(((((...(((((((((.........(((((((((........)))))))))..)))))))))..)))))..... (-15.54 = -18.30 + 2.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:21 2006