| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,103,054 – 3,103,163 |
| Length | 109 |
| Max. P | 0.871585 |
| Location | 3,103,054 – 3,103,163 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.33 |
| Mean single sequence MFE | -32.36 |
| Consensus MFE | -21.50 |
| Energy contribution | -19.95 |
| Covariance contribution | -1.55 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.871585 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3103054 109 - 27905053 ACAUAGAUUUAAUAAGCAG--CCAAAUGGAAGGCCGUCUCAUCGAGUAUCGUCCGAUAGGCGGCGGCCUGGACUACCAUCACAACUCGCCGCUGAUUGGGGAGAUUCCGCC ...............((.(--((........))).(((((..((.....))((((((.((((((((..((((......)).))..)))))))).)))))))))))...)). ( -32.60) >DroVir_CAF1 29783 101 - 1 AAAU---AUUAAGA-------ACAAAUGGAGGGCCGUUUGAUUGAGUAUCGUCCAAUUGGCGGUGGCCUCGAUUACCAUCACAAUUCCCCGCUAAUUGGCGAGAUUCCGCC ....---.......-------.(((((((....)))))))...((((.(((.(((((((((((.((....(((....)))......)))))))))))))))).)))).... ( -33.00) >DroGri_CAF1 31329 108 - 1 AAAU---UUUAAUAAACAAUACAAAAUGGAGGGUCGUUUAAUCGAGUACCGUCCAAUUGGCGGUGGCCUCGAUUACCAUCACAAUUCUCCGCUAAUUGGUGAGAUUCCGCC ....---....................(((((((.((.(((((((((((((((.....)))))))..)))))))).....)).))))))).......((((......)))) ( -29.30) >DroWil_CAF1 40613 108 - 1 AAGUGAAUUAUAUAAACG---AAUAAUGGAAGGCCGCUUAAUUGAGUAUCGGCCAAUUGGCGGUGGUCUCGAUUAUCAUCACAAUUCUCCAUUGAUUGGCGAGAUACCACC ..((.((((.(((.....---.)))......((((((((....)))...))))))))).))((((((((((...((((..............))))...)))))..))))) ( -27.24) >DroMoj_CAF1 35055 99 - 1 AAAU---AUC--GA-------CUAAAUGGAGGGCCGUUUAAUUGAGUAUCGUCCAAUUGGCGGCGGCCUCGACUACCAUCACAAUUCGCCGCUGAUUGGGGAGAUUCCGCC ....---.((--((-------.(((((((....))))))).))))(.(((.((((((..(((((((....((......)).....)))))))..))))))..))).).... ( -33.00) >DroAna_CAF1 28713 109 - 1 AAAUUGAUUUAAUAAUCAA--CCACAUGGAAGGCCGACUGAUCGAAUAUCGGCCGAUCGGCGGCGGCCUGGACUACCAUCACAACUCGCCGCUGAUUGGAGAGAUUCCGCC ...((((((....))))))--......((((((((((...........))))))((((((((((((..((((......)).))..)))))))))))).......))))... ( -39.00) >consensus AAAU___UUUAAUAA_CA___CCAAAUGGAAGGCCGUUUAAUCGAGUAUCGUCCAAUUGGCGGCGGCCUCGACUACCAUCACAAUUCGCCGCUGAUUGGCGAGAUUCCGCC ..........................((((((((((((((((((.........)))))))..)))))))...............(((.(((.....))).)))..)))).. (-21.50 = -19.95 + -1.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:20 2006