Locus 9157

Sequence ID 3R_DroMel_CAF1
Location 24,417,243 – 24,417,334
Length 91
Max. P 0.540832
window14651

overview

Window 1

Location 24,417,243 – 24,417,334
Length 91
Sequences 3
Columns 91
Reading direction reverse
Mean pairwise identity 85.71
Mean single sequence MFE -25.47
Consensus MFE -19.97
Energy contribution -20.63
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 0.78
SVM decision value 0.01
SVM RNA-class probability 0.540832
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24417243 91 - 27905053
UGGAGCACAUGAGCACUCACCACAUGCAGCUCCAACUCCAACUCCAGCUCCAACUUGGGACUCCAGUCGCAGCUUCGGGUUCCACACGGAA
((((((.((((...........))))..))))))..............(((....((((((((.(((....)))..))))))))...))). ( -24.50)
>DroEre_CAF1 11610 91 - 1
UGGAGCACAUGAGCACUCACCACAUGCAGCUCCAACUCCAACUACAACUCCGACUUGGGACUCCAGUCGCAGCUUCAGGUUGCACACGGAA
((((((.((((...........))))..))))))..............(((((((.((....))))))(((((.....)))))....))). ( -27.50)
>DroYak_CAF1 15328 79 - 1
UGGAGCACAUGAGCACUCACCACAUGCAGCUCCAACUCCAG------------CUUGGGACUCCAGUCGCAGCUUCAGCUUGCACAGGGAG
((((((.((((...........))))..)))))).((((..------------.....(((....)))(((((....)).)))....)))) ( -24.40)
>consensus
UGGAGCACAUGAGCACUCACCACAUGCAGCUCCAACUCCAACU_CA_CUCC_ACUUGGGACUCCAGUCGCAGCUUCAGGUUGCACACGGAA
((((((.((((...........))))..))))))..(((...................(((....)))(((((.....)))))....))). (-19.97 = -20.63 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:51 2006