| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,405,795 – 24,405,900 |
| Length | 105 |
| Max. P | 0.704530 |
| Location | 24,405,795 – 24,405,900 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 94.15 |
| Mean single sequence MFE | -27.60 |
| Consensus MFE | -23.82 |
| Energy contribution | -23.60 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.704530 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24405795 105 + 27905053 CUCCAGUCGGCUUGGAGGCUAUAAAAAAUGUAUUAAAGCCAGUCCAGUCGCCCCCACAGGCACAC--AUGUAC--AUACAUAUAAAUAAAAUGUGUCGUAUGGACAUAU .(((((.....)))))((((.(((........))).)))).((((.((.(((......)))))..--..((((--((((((.........)))))).)))))))).... ( -26.50) >DroSec_CAF1 227862 105 + 1 CUCCAGUCGGCUUGGAGGCUAUAAAAAAUGUAUUAAAGCCAGUCCAGUCGCCCCCACAGGCACAA----GUACAUGUACGUAUAAAUAAAAUGUGUCGUAUGGACAUAU .(((((.....)))))((((.(((........))).)))).((((.((.(((......)))))..----......(((((((((.......)))).))))))))).... ( -25.20) >DroSim_CAF1 237077 109 + 1 CUCCAGUCGGCUUGGAGGCUAUAAAAAAUGUAUUAAAGCCAGUCCAGUCGCCCCCACAGGCACAUGUAUGUACAUGUACAUAUAAAUAAAAUGUGUCGUAUGGACAUAU .(((((..((((((((((((.(((........))).))))..)))))..)))..)...((((((((((((((....))))))).......)))))))...))))..... ( -31.11) >consensus CUCCAGUCGGCUUGGAGGCUAUAAAAAAUGUAUUAAAGCCAGUCCAGUCGCCCCCACAGGCACAA__AUGUACAUGUACAUAUAAAUAAAAUGUGUCGUAUGGACAUAU .(((((.....)))))((((.(((........))).)))).((((.((.(((......)))))......((((...(((((.........)))))..)))))))).... (-23.82 = -23.60 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:44 2006