| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,076,035 – 3,076,155 |
| Length | 120 |
| Max. P | 0.956011 |
| Location | 3,076,035 – 3,076,155 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.33 |
| Mean single sequence MFE | -41.50 |
| Consensus MFE | -23.52 |
| Energy contribution | -23.25 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.956011 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3076035 120 + 27905053 UACACUGGUGCUCAUCGAUGGUACCUGGCCUCAGGCUAAAGCCAUUUACGCUAGCAGUCCGGCUCUACACCGCCUGCGACAGGUGAAACUCAUCGCCGUGGGUAUAAGUGACUACAUCAU ..((((.((((((((((((((((((((......(((....)))..........((((..(((.......))).))))..))))))....))))))..)))))))).)))).......... ( -41.00) >DroVir_CAF1 1997 120 + 1 UACUCUCGUGCUCAUUGACGGCACUUGGCCACAAGCGAAGGCUAUCUAUGCCAGCAGUCCGGCACUGCAUCGCUUGCGCCAAAUCAAACUAAUUGCGGUGGGCAUUAGCGAUUACAUUAU ..(.((.((((((((((.......(((((..(((((((.(((.......))).(((((.....))))).))))))).)))))..(((.....))))))))))))).)).).......... ( -40.90) >DroGri_CAF1 2236 120 + 1 UACGCUGGUGCUCAUUGACGGUACUUGGCCGCAGGCAAAGGCCAUCUAUGCCAGCAGUCCGGCACUGCACCGCCUGCGUCAGGUAAAGCUCAUUGCGGUGGGCAUUAGCGAUUAUAUUAU ..((((((((((((((.....((((((((.((((((...(((.......))).(((((.....)))))...))))))))))))))..((.....)))))))))))))))).......... ( -55.90) >DroWil_CAF1 9680 120 + 1 UACCUUAAUCCUAAUAGAUGGCACCUGGCCCCAGGCUAAGGCCAUCUAUGCCAGCAGUCCUGUUCUGCAUCGUCUCAAGCAGGUCAAGCUCAUUGCUGUUGGCAUCAGUGACUAUAUCAU ........((((.(((((((((.(.(((((...))))).))))))))))((((((.(.((((((.((........)))))))).).(((.....)))))))))...)).))......... ( -40.40) >DroMoj_CAF1 2009 120 + 1 UACCCUGGUGCUCAUUGACGGCACCUGGCCCCAAGCAAAGGCCAUCUAUGCUAGUAGUCCGGCACUGCAUCAACUGCGACAAGUCAAACUAAUUGCGGUGGGUGUGAGUGACUACAUUAU ......((((((.......))))))(((((.........))))).........((((((....((((((((.(((((((..((.....))..))))))).))))).)))))))))..... ( -39.00) >DroAna_CAF1 2048 120 + 1 CACGCUGCUACUUAUAGACGGCACUUGGCCGCAGGCCAAAGCCAUUUACGCCAGCAGUCCUGCUUUACAUCGCCUCCGUCAAGUUAAACUUAUUGCUGUGGGCAUAAGUGACUAUAUCAU (((((((((.....((((.(((..((((((...)))))).))).))))....)))))).............(((..((.(((..........))).))..)))....))).......... ( -31.80) >consensus UACCCUGGUGCUCAUUGACGGCACCUGGCCCCAGGCAAAGGCCAUCUAUGCCAGCAGUCCGGCACUGCAUCGCCUGCGACAAGUCAAACUCAUUGCGGUGGGCAUAAGUGACUACAUCAU ..(.((.((((((((((..(((.....))).(((((...(((.......))).((((.......))))...)))))...................)))))))))).)).).......... (-23.52 = -23.25 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:14 2006