Locus 9121

Sequence ID 3R_DroMel_CAF1
Location 24,350,637 – 24,350,744
Length 107
Max. P 0.575924
window14593

overview

Window 3

Location 24,350,637 – 24,350,744
Length 107
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 75.26
Mean single sequence MFE -40.67
Consensus MFE -19.99
Energy contribution -19.08
Covariance contribution -0.91
Combinations/Pair 1.64
Mean z-score -1.76
Structure conservation index 0.49
SVM decision value 0.08
SVM RNA-class probability 0.575924
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24350637 107 - 27905053
UCGAUCGGAAGAUUGGGGCUUGCCGUCAGUUCUACUAUGGCAACUGUGGCGGCAAUGGCAAUCGCUUCGAGACAGAGAACGAUUGUCAGCAGCGUUGUCUUAGCCAA
((((((....))))))(((((((((.(((((((.....)).))))))))))((..(((((((((.(((........))))))))))))...))........)))).. ( -41.40)
>DroVir_CAF1 158079 107 - 1
UUGAUAGGUCUAGUGGUGCUUGUCGCCAAUUUUACUAUGGUGGCUGCGGAGGCAAUGGCAACCGCUUCGAGACCGAAUCUGACUGUCUGCAGCGCUGUGGCAGACAG
..(((.((((((((((((((.(((((((.........)))))))(((....)))..))).))))))...)))))..)))...((((((((.((...)).)))))))) ( -42.10)
>DroPse_CAF1 182209 107 - 1
UUGACGGAGAGAGCGGCGCGUGUCGCCAGUUCUACUAUGGCGGCUGUGCUGGCAACGGCAAUCGCUUUGAGACUGAGUCAGACUGCCAGGCGCGCUGUGUCAGCCCC
.....((.....((((((((((((((((.........)))))))....((((((..(((....)))....(((...)))....))))))))))))))).....)).. ( -43.00)
>DroEre_CAF1 184857 107 - 1
UCGAUCGGAAGACUGGCGCUUGCCGUCAGUUCUACUAUGGCAACUGUGGCGGCAAUGGCAAUCGUUUCGAGACAGAGAACGAUUGCCAGCAGCGUUGCCUUAGUCAG
....((....))(((((..(((((((.((.....)))))))))....((((((..(((((((((((((......))).)))))))))).....))))))...))))) ( -43.00)
>DroYak_CAF1 178844 107 - 1
UUGAUCGGAAGGCUGGCUCUUGCCGUCAGUUCUACUAUGGCAAUUGUGGCGGCAAUGGCAAUCGUUUCGAGACAGAGAACGAUUGUCAGCAGCGUUGCCUCAGUCAG
..........(((((((..(((((((.((.....)))))))))..))((((((..(((((((((((((......))).)))))))))).....)))))).))))).. ( -41.00)
>DroAna_CAF1 174650 107 - 1
UUGAGCGGGCCACUGGGGCUUGCCGUCAAUUCUAUUAUGGCGGUGCUGGCGGUAACGGCAAUCGCUUUGAGACGGAGUCAGAAUGCCAGGAGAAAUGUACUAGACAG
..(.(((((((.....))))))))((((.((((....(((((...(((((.....((.(((.....)))...))..)))))..)))))..)))).)).))....... ( -33.50)
>consensus
UUGAUCGGAAGACUGGCGCUUGCCGUCAGUUCUACUAUGGCAACUGUGGCGGCAAUGGCAAUCGCUUCGAGACAGAGAACGAUUGCCAGCAGCGUUGUCUCAGACAG
........((((.((((((((((((((((((((.....)).)))..))))))))..((((.((..(((......)))...)).))))...)))))))))))...... (-19.99 = -19.08 +  -0.91)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:27:01 2006