| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,073,793 – 3,073,903 |
| Length | 110 |
| Max. P | 0.642900 |
| Location | 3,073,793 – 3,073,903 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 77.47 |
| Mean single sequence MFE | -16.41 |
| Consensus MFE | -13.18 |
| Energy contribution | -12.93 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.21 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.642900 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3073793 110 + 27905053 GAAGAUCUGGGCUCCAACUGUCCAGGACUCACUCGUGACGAACACUAGC----UCCAAUCAAUAAAAUAAAAUAAAAAAACUA-GCUUGAUUGCUUACACAUA-AUUUCAUAAAAU ((((.(((((((.......)))))))........(((..((........----))(((((((.....................-..)))))))....)))...-.))))....... ( -16.10) >DroSec_CAF1 60634 109 + 1 GAAGAUCUGGGCUCCAACUGUCCAGGACUCACUCGUGACGAACACUAGC----UCUAAUCAAUAUAAUAAAA-AAAAAAACUA-GCUUGAUUGCUUACACAUA-AUUUCACAAAAU ((((.(((((((.......)))))))........(((((((.((..(((----(..................-.........)-))))).))).)))).....-.))))....... ( -16.13) >DroSim_CAF1 62664 108 + 1 GAAGAUCUGGGCUCCAACUGUCCAGGACUCACUCGUGACGAACACUAGC----UCCGAUCAAUAAAAUAAAA-A-AAAAACUA-GCUUGAUUGCUUACACAUA-AUUUCACAAAAU ((((((((((((.......)))))(((....((.(((.....))).)).----)))))))............-.-.......(-((......)))........-..)))....... ( -17.80) >DroEre_CAF1 62079 104 + 1 GAAGAUCUGGGCUCUAACUGUCCAGGACUCACUCGUGACGAACACUAACUAGCUCCAGUCAAUA----------AAAAAUGUAU-CUUGAUUGCUUACACAUA-AUUUCAAAUAAU ((((.(((((((.......)))))))........(((..((.(........).))(((((((..----------..........-.)))))))....)))...-.))))....... ( -16.62) >DroYak_CAF1 62746 105 + 1 GAAGAUCUGGGCUCUAACUGUCCAGGACUCACUCGUGACGACCACUAACUAGCUGCAGAAAAUA----------AAAACGAUUUGCUUAAUUGCUUACACAUA-AUUUCAAAUAAU ((((.(((((((.......)))))))........(((.....))).....(((.(((((.....----------.......)))))......)))........-.))))....... ( -15.60) >DroAna_CAF1 76879 94 + 1 GAUGACCUGGACUCAAAUUGUCCGGGACUAACUCGUGAUGACCACUAAUU------------------AAAA--UAUGAACUA--CUUUAUAAAUUACACAUAAAUUUCACAAAAU .....(((((((.......)))))))........((((...........(------------------((..--((((((...--.))))))..)))..........))))..... ( -16.20) >consensus GAAGAUCUGGGCUCCAACUGUCCAGGACUCACUCGUGACGAACACUAAC____UCCAAUCAAUA____AAAA__AAAAAACUA_GCUUGAUUGCUUACACAUA_AUUUCACAAAAU ((((.(((((((.......)))))))........(((.....)))............................................................))))....... (-13.18 = -12.93 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:13 2006