| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,343,550 – 24,343,665 |
| Length | 115 |
| Max. P | 0.607312 |
| Location | 24,343,550 – 24,343,665 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 80.95 |
| Mean single sequence MFE | -41.25 |
| Consensus MFE | -28.04 |
| Energy contribution | -28.57 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.607312 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24343550 115 - 27905053 GACUACAGAUCUACUCACCCGCAAGUGCUCCAGCCAGCUGGCCAACUGUUUGCAUGUCGCCGGCGCCAACUUGCUCCACGCGGCUGGCAGGAGGCCAUUGAACAACGAGUUGGCA ....................((....))....(((((((((((..(((((.....(((((.((.((......)).))..))))).)))))..)))))(((.....))))))))). ( -36.70) >DroVir_CAF1 150882 109 - 1 -UA---UG--CGACUCACCUUUAAGUGCUCCAGCCAGCUGGCCAGCUGCUUGCAUGUGGCCGGCGCCAGUUUGGCCCACGAGGCUGGCAGCAGGCCAUUGAAUAACGAGUUGGCA -..---..--((((((...(((((.((((((((((.((((((((..((....))..))))))))(((.....)))......)))))).)))).....)))))....))))))... ( -46.40) >DroPse_CAF1 174891 103 - 1 ------------ACUCACCCGCAAGUGUUCCAGCCAGCUGGCCAACUGUUUGCAUGUGGCCGGCGCCAGGGAGCUCCAGGAUGUUGGCAGCAGGCCAUUGAACAACGAGUUGGCA ------------((((...(....)(((((..(((.((((((((..((....))..))))))))........(((((((....)))).))).)))....)))))..))))..... ( -37.40) >DroWil_CAF1 137861 113 - 1 AACUGCUG--CGACUCACCUGCAAAUGAUUCAACCAGCUAGCUAACUGUUUGCAUGUGGCCGGCGCCAGUGAGGCCCACGCGUUUGGCAAAAGGCCAUUGAACAACGAGUUGGCA ....((((--.((.(((........))).))...))))..((((((((((..((.((((((((.(((.....)))))..((.....))....))))))))...))).))))))). ( -37.40) >DroMoj_CAF1 127239 109 - 1 -AC---UG--CGACUCACCUUCAAAUGUUCCAGCCAGCUGGCCAACUGCUUGCAUGUGGCCGGCGCCAGUUUGCUCCAUGCGGCUGGCAGGAGGCCAUUGAAUAACGAGUUGGCA -..---..--((((((...(((((.((..(...((.((((((((..((....))..))))))))(((((((.((.....))))))))).)).)..)))))))....))))))... ( -44.60) >DroAna_CAF1 167516 115 - 1 GCCUAUAACCGUACUCACCCGCAAGUGCUCCAGCCAACUGGCCAACUGCUUGCAUGUCGCAGGCGCCAGUUUGCUCCACGCGGCUGGCAGGAGGCCAUUGAACAAAGAGUUGGCA ..........(((((........)))))....(((((((((((..((((((((.....))))))(((((((.((.....)))))))))))..)))).((.....)).))))))). ( -45.00) >consensus _AC___UG__CGACUCACCCGCAAGUGCUCCAGCCAGCUGGCCAACUGCUUGCAUGUGGCCGGCGCCAGUUUGCUCCACGCGGCUGGCAGGAGGCCAUUGAACAACGAGUUGGCA ..............................(((....)))(((((((..(((...((((((...(((((((..........)))))))....))))))....)))..))))))). (-28.04 = -28.57 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:58 2006