| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 24,323,035 – 24,323,127 |
| Length | 92 |
| Max. P | 0.978213 |
| Location | 24,323,035 – 24,323,127 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 77.62 |
| Mean single sequence MFE | -24.80 |
| Consensus MFE | -13.97 |
| Energy contribution | -14.42 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.978213 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 24323035 92 - 27905053 CCGGGGGACUUCCUUUUCCUCC---UCUCCGACAACUUACAUCAUCGCAGAACUCAUCGAUUUCGACGGAAGUCAUGUCGGCGAAUUUCUGCUUA ..((((((........))))))---.....................((((((.((..((((...(((....)))..))))..))..))))))... ( -28.50) >DroVir_CAF1 125327 78 - 1 CUGG--CA--------------UU-GUCUUGACAACUUACAUCGUCGCAGAAAACGUCGAUUUCUACGGAAGUCAUCUCCGCGAACUUUUGCUUA ..((--((--------------((-((....)))).........((((.((.....))((((((....))))))......)))).....)))).. ( -17.70) >DroSec_CAF1 145365 92 - 1 CCGGGGGACUUCCUUUUCCUCC---AUUCCGACAACUUACAUCAUCGCAGAACUCAUCGAUUUCGACGGAAGUCAUGUCGGCGAAUUUCUGCUUA ..((((((........))))))---.....................((((((.((..((((...(((....)))..))))..))..))))))... ( -29.00) >DroEre_CAF1 154656 84 - 1 GCGG--AACUUCCUUUUCCUU--------CGACAACUUACAUCAUCGCAGAACUCAUCGAUUUCGACGGAAGUCAUGUCGGCGA-UUUCUGCUUA ..((--((.......))))..--------.................((((((.((..((((...(((....)))..))))..))-.))))))... ( -24.20) >DroWil_CAF1 116073 89 - 1 GC--AGGACGUCCUUUUGU----GAGGCUUGACAACUUACAUCAUCGUAGAAGACUUCGAUUUCCACGGAAGUCAUAUCUGCGAAUUUCUGCUUA ((--((((........(((----(((.........))))))...(((((((.((((((..........))))))...)))))))..))))))... ( -27.30) >DroYak_CAF1 150874 87 - 1 GCGGGGUACUUCCUUUUCCUU--------CAACAACUUACAUCAUCGCAGAACUCAUCGAUUUCGACGGAAGUCAUGUCGGCGAAUUUCUGCUUA ..((((....)))).......--------.................((((((.((..((((...(((....)))..))))..))..))))))... ( -22.10) >consensus CCGGGGGACUUCCUUUUCCU_________CGACAACUUACAUCAUCGCAGAACUCAUCGAUUUCGACGGAAGUCAUGUCGGCGAAUUUCUGCUUA ..............................................((((((..(.(((((...(((....)))..))))).)...))))))... (-13.97 = -14.42 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:52 2006