Locus 911

Sequence ID 3R_DroMel_CAF1
Location 3,072,134 – 3,072,251
Length 117
Max. P 0.921389
window1444

overview

Window 4

Location 3,072,134 – 3,072,251
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 73.32
Mean single sequence MFE -36.93
Consensus MFE -14.38
Energy contribution -15.72
Covariance contribution 1.34
Combinations/Pair 1.38
Mean z-score -2.29
Structure conservation index 0.39
SVM decision value 1.14
SVM RNA-class probability 0.921389
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3072134 117 - 27905053
UGCCCUGCUCCAGGCUAACAAACGCAAGCGAAAGGCCAAGACGACCGGCGAGAAUGAUCCUGACCAAGGACAAUCCAUCGGCUUGGAAAGGGCCUAUGCCUCUGACACGAAAAAAGA
.(((((..(((((((.......(....)(((...(((.........)))(.((.((.((((.....)))))).))).)))))))))).)))))........................ ( -33.90)
>DroVir_CAF1 117030 111 - 1
GGCCCUGCUGCAGGCAAACAAACGCAAGCGAAAGGCAAAGGCAGUGCCAUUGGAGGAG------CAGCAGCAGUCUGUGAGUCUGGAAAUGGCCUAUGCUACAGCCAGCAAAAAAGA
.....((((((..((........))..))....(((...((((..((((((...(((.------..((((....))))...)))...))))))...))))...)))))))....... ( -33.00)
>DroPse_CAF1 59500 114 - 1
GGCGCUGCUCAAUGAAAACAAACGCAAAAGAAAGGCCAAGGCAGUCGAAGAUGUGGA---UGAUCAGCAGCAAUCUGUGGGCCUGGAAAUGGCCUACGCCACGGCCAGCAAAAAGGA
(((((((((....((...((..((((...((...((....))..)).....))))..---)).)))))))).....(((((((.......))))))))))....((........)). ( -36.80)
>DroGri_CAF1 73414 114 - 1
GGCGCUGCUGCAGGAAAACAAACGCAAGCGCAAAGCAAAAGCUGUUCCUUUGGAUGAUC---AGCAGCAGCAAUCGGUGGGUCUUGAAAUGGCCUACGCGACGGCCAGCAAAAAGGA
((((((((((((((((.......((....))..(((....))).))))).((......)---)))))))))..((((((((((.......))))))).)))..)))........... ( -42.80)
>DroAna_CAF1 75388 117 - 1
GGCGCUGCUCCAGGCCAACAAACGCAAGCGGAAGGCUAAAGCGGCCGAAGAGGAUAACGAAGAGCAACUGCAGUCGGUGGGCUUAGAAAUGGAGUAUGCGUCAGCUACCAAAAAAGA
((((((((((((((((.((..((....((((...(((....((.((.....))....))...)))..)))).))..)).))))......))))))).)))))............... ( -38.30)
>DroPer_CAF1 59494 114 - 1
GGCGCUGCUCAAUGAAAACAAACGCAAAAGAAAGGCCAAGGCAGUCGAAGAUGUGGA---UGAUCAGCAGCAAUCUGUGGGCCUGGAAAUGGCCUACGCCACCGCCAGCAAAAAGGA
(((((((((....((...((..((((...((...((....))..)).....))))..---)).)))))))).....(((((((.......))))))))))....((........)). ( -36.80)
>consensus
GGCGCUGCUCCAGGAAAACAAACGCAAGCGAAAGGCCAAGGCAGUCGAAGAGGAGGA___UGAGCAGCAGCAAUCUGUGGGCCUGGAAAUGGCCUACGCCACAGCCAGCAAAAAAGA
(((((((((.............((....))...(((.......)))...................)))))).....(((((((.......)))))))......)))........... (-14.38 = -15.72 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:12 2006