Locus 9100

Sequence ID 3R_DroMel_CAF1
Location 24,288,474 – 24,288,593
Length 119
Max. P 0.835456
window14563

overview

Window 3

Location 24,288,474 – 24,288,593
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 86.11
Mean single sequence MFE -27.64
Consensus MFE -21.85
Energy contribution -21.20
Covariance contribution -0.65
Combinations/Pair 1.22
Mean z-score -2.34
Structure conservation index 0.79
SVM decision value 0.73
SVM RNA-class probability 0.835456
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 24288474 119 + 27905053
UUAAAACAUUUUAAUAUAUUUUCAUUCGCUCUGAGCCGGCACUUAAUCAAGUGCUCGGUUUGAUUAACAAAUUGUGUUUCCCGCGAUCUCGAAAUAUACAUUUAGGUCCGAACUUU-UAC
..............((((((((...((((...((((((((((((....)))))).))))))((...((.....))...))..))))....))))))))..................-... ( -25.30)
>DroEre_CAF1 119638 120 + 1
UUAAAAUAUUUCAAUAUAUUUCCGUUCGCCCUGUACCGACACUUAAUCAAGUGCUCGGUUUGAUUAACAAAUUGGGUUGCCCGCGGUCACGAAAUAUUUAUUCAAGUCCGAAAUUUAUUC
...(((((((((.........((((..((((...((((((((((....))))).)))))(((.....)))...)))).....))))....)))))))))..................... ( -23.72)
>DroYak_CAF1 115851 120 + 1
UUAAAAUAUUUCAAUAUAUUUCCAUUUGCCCCGAACCGGCACUUAAUCAAGUGCUCGGUUUGAUUAACAAAUAGGGCUGCCCGCGGUCAGGAAAUAUUCAUUUAAGACCGAAAUUUAUUC
.......(((((...(((((((((((((...(((((((((((((....)))))).))))))).....)))))..(((((....))))).))))))))((......))..)))))...... ( -33.90)
>consensus
UUAAAAUAUUUCAAUAUAUUUCCAUUCGCCCUGAACCGGCACUUAAUCAAGUGCUCGGUUUGAUUAACAAAUUGGGUUGCCCGCGGUCACGAAAUAUUCAUUUAAGUCCGAAAUUUAUUC
...............(((((((...((((..(((((((((((((....))))).))))))))...........(((...)))))))....)))))))....................... (-21.85 = -21.20 +  -0.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:26:34 2006