Locus 910

Sequence ID 3R_DroMel_CAF1
Location 3,070,822 – 3,070,919
Length 97
Max. P 0.792757
window1443

overview

Window 3

Location 3,070,822 – 3,070,919
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 81.44
Mean single sequence MFE -21.67
Consensus MFE -13.91
Energy contribution -15.28
Covariance contribution 1.37
Combinations/Pair 1.34
Mean z-score -2.19
Structure conservation index 0.64
SVM decision value 0.59
SVM RNA-class probability 0.792757
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3070822 97 - 27905053
UGUAAAUCUCUUUCCUGGAAUUUUAAAUAUAGAGGAUGAUUUUUAGGUUUGCGCACGUCAUUAAUUUGGACUUCUUCUCCGAUCUAAUCGAUGUGCU
.((((((((...((((................))))........))))))))(((((((((((..(((((.......)))))..)))).))))))). ( -24.89)
>DroVir_CAF1 115719 97 - 1
AAUUGACAUCCCGAUUAGAGAAUAUAACUUAUAUAUUGACUUACAGAUUCGCUCAUGUUAUCAAUCUGGAGUUCUUUUCCGAUCUCAUAGAUGUGCU
.....(((((..(((..(((((...(((((....(((((...(((((.....)).)))..)))))...))))).)))))..))).....)))))... ( -16.90)
>DroSec_CAF1 57653 95 - 1
UGUUAAUCUC--UCAUGGAAUUUUUAAUAUAGAGUAUGAUUUUUAGAUUUGCGCACGUCAUUAAUUUAGACUUCUUCUCCGAUCUAAUCGAUGUGCU
.((.(((((.--((((...(((((......))))))))).....))))).))(((((((((((..(..((.......))..)..)))).))))))). ( -16.40)
>DroSim_CAF1 59692 97 - 1
UGUAAAUCUCUUUCAUGGAACUUUUAAUAUAGAGUAUGAUUUUUAGAUUUGCGCACGUCAUUAAUUUGGACUUCUUCUCCGAUCUAAUCGAUGUGCU
.((((((((...((((...(((((......))))))))).....))))))))(((((((((((..(((((.......)))))..)))).))))))). ( -28.80)
>DroEre_CAF1 59106 97 - 1
UGUAAAUUUCUUUUUUGGAACUUUUAAUAUAGAGUAUGGUUUUUAGAUUUGCGCACGUCAUUAAUUUGGACUUUUUCUCCGAUCUGAUCGACGUGCU
.((((((((((.....)))(((((......)))))..........)))))))(((((((((((..(((((.......)))))..)))).))))))). ( -26.10)
>DroYak_CAF1 59763 97 - 1
UGUAAAUAUCUUUCUUGGAAUAUUUAAAAUAGAGUAUGGUUUUUAGAUUUGCACACGUCAUUAAUUUGGACUUUUUCUCUGAUCUGAUCGAUGUGCU
(((((((.(((.....)))((((((......)))))).........)))))))((((((((((..(..((.......))..)..)))).)))))).. ( -16.90)
>consensus
UGUAAAUCUCUUUCUUGGAAUUUUUAAUAUAGAGUAUGAUUUUUAGAUUUGCGCACGUCAUUAAUUUGGACUUCUUCUCCGAUCUAAUCGAUGUGCU
.((((((((..........(((((......))))).........))))))))(((((((((((..(((((.......)))))..)))).))))))). (-13.91 = -15.28 +   1.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:11 2006